Re: [R] Contrasts in coxph

2021-04-06 Thread David Winsemius
On 4/5/21 8:28 PM, Sorkin, John wrote: I would like to define contrasts on the output of a coxph function. It appears that the contrast function from the contrast library does not have a method defined that will allow computation of contrasts on a coxph object. How does one define and evalua

Re: [R] Contrasts in coxph

2021-04-06 Thread John Fox
Dear John, It's not clear to me exactly what you have in mind, but car::linearHypothesis(), multcomp::glht(), and the emmeans package work with Cox models. I expect there are functions in other packages that will work too. Here's an example, surely simpler than what you have in mind, but you

Re: [R] Contrasts in coxph

2021-04-06 Thread Göran Broström
Dear John, I googled "contrasts Cox regression" and found https://stats.stackexchange.com/questions/15603/performing-contrasts-among-treatment-levels-in-survival-analysis where Frank Harrell reports how to do what you want with his rms package. At least I think so, haven't tried it myself. B

[R] Contrasts in coxph

2021-04-05 Thread Sorkin, John
I would like to define contrasts on the output of a coxph function. It appears that the contrast function from the contrast library does not have a method defined that will allow computation of contrasts on a coxph object. How does one define and evaluate contrasts for a cox model? Thank you, J