:22 PM
To: Nataraj B (ORLL-Biotech)
Cc: kjetilbrinchmannhalvor...@gmail.com; r-help@r-project.org
Subject: Re: [R] Cholesky decomposition error
On Jun 20, 2012, at 06:17 ,
wrote:
> Dear Peter,
>
> Thanks for your reply, as per my last post; my current problem is not on
> posit
al Message-
> From: peter dalgaard [mailto:pda...@gmail.com]
> Sent: Tuesday, June 19, 2012 8:07 PM
> To: Nataraj B (ORLL-Biotech)
> Cc: kjetilbrinchmannhalvor...@gmail.com; r-help@r-project.org
> Subject: Re: [R] Cholesky decomposition error
>
>
> On Jun 19, 2012,
:07 PM
To: Nataraj B (ORLL-Biotech)
Cc: kjetilbrinchmannhalvor...@gmail.com; r-help@r-project.org
Subject: Re: [R] Cholesky decomposition error
On Jun 19, 2012, at 10:31 ,
wrote:
> Dear Kjetil, thanks for your time to detail the code. Sorry, I am still not
> able to grasp why you are cr
value since the function is for maximization
> return(-logl)
> }
>
> Is there anything missing in my approach of function optimization for
> variable estimation of a multivariate normal distribution? I looking forward
> your valuable comments.
>
> Regards,
> B.Nataraj
>
aj
-Original Message-
From: Kjetil Halvorsen [mailto:kjetilbrinchmannhalvor...@gmail.com]
Sent: Monday, June 18, 2012 10:07 PM
To: Nataraj B (ORLL-Biotech)
Cc: r-help@r-project.org
Subject: Re: [R] Cholesky decomposition error
see inline!
On Mon, Jun 18, 2012 at 12:38 AM, wrote:
> Thanks Kjeti
to implements log-Cholesky in my
> situation, but I am simply not able to see where is the Choleksy
> decomposition to be implemented in this my workflow.
>
> Regards,
> B.Nataraj
>
>
>
>
> -Original Message-----
> From: Kjetil Halvorsen [mailto:kjetilbrinchmannh
his my workflow.
Regards,
B.Nataraj
-Original Message-
From: Kjetil Halvorsen [mailto:kjetilbrinchmannhalvor...@gmail.com]
Sent: Sunday, June 17, 2012 4:10 AM
To: Nataraj B (ORLL-Biotech)
Cc: r-help@r-project.org
Subject: Re: [R] Cholesky decomposition error
see below.
On Fri,
rom: Kjetil Halvorsen [mailto:kjetilbrinchmannhalvor...@gmail.com]
> Sent: Friday, June 15, 2012 11:09 PM
> To: Nataraj B (ORLL-Biotech)
> Cc: gunter.ber...@gene.com; r-help@r-project.org
> Subject: Re: [R] Cholesky decomposition error
>
> see inline.
>
> On Fri, Jun
om: Kjetil Halvorsen [mailto:kjetilbrinchmannhalvor...@gmail.com]
Sent: Friday, June 15, 2012 11:09 PM
To: Nataraj B (ORLL-Biotech)
Cc: gunter.ber...@gene.com; r-help@r-project.org
Subject: Re: [R] Cholesky decomposition error
see inline.
On Fri, Jun 15, 2012 at 4:33 AM, wrote:
> Thanks for you
and if possible please help me to do
> that.
>
> Regards,
> B.Nataraj
>
>
> -Original Message-
> From: Bert Gunter [mailto:gunter.ber...@gene.com]
> Sent: Friday, June 15, 2012 1:51 PM
> To: Nataraj B (ORLL-Biotech)
> Cc: r-help@r-project.org
> Subj
the iteration process and if possible please help me to do that.
Regards,
B.Nataraj
-Original Message-
From: Bert Gunter [mailto:gunter.ber...@gene.com]
Sent: Friday, June 15, 2012 1:51 PM
To: Nataraj B (ORLL-Biotech)
Cc: r-help@r-project.org
Subject: Re: [R] Cholesky decomposition error
am confused and I am looking for some hints to introspect the
> problem further.
>
> Regards,
> B.Nataraj
>
>
>
>
>
> -Original Message-
> From: Bert Gunter [mailto:gunter.ber...@gene.com]
> Sent: Thursday, June 14, 2012 6:18 PM
> To: Nataraj B (ORLL-Biotech)
am confused and I am looking for some hints to introspect the problem
further.
Regards,
B.Nataraj
-Original Message-
From: Bert Gunter [mailto:gunter.ber...@gene.com]
Sent: Thursday, June 14, 2012 6:18 PM
To: Nataraj B (ORLL-Biotech)
Cc: r-help@r-project.org
Subject: Re: [R] Cholesky dec
Hello,
Hello,
If the input matrix is symmetric, positive definite then the Cholesky
decomposition algorithm is stable. That's why it is so used in
statistics, where many times the matrices meet those conditions.
Therefore, the matrix isn't symmetric, positive definite to begin with.
Rui Barr
Your matrix is not symmetric, positive definite. If you don't know
what this means, you shouldn't be using chol()
This may be because it isn't to begin with, or due to numerical error,
it doesn't behave as one in the decomposition. My relative ignorance
of numeric methods for linear algebra preven
Dear friends,
When I do Cholesky decomposition for a 15x15 matrix using the function chol(),
I get the following error for which I do not understand the meaning of the error
Error in chol.default(M_cov) :
the leading minor of order 10 is not positive definite
When I searched online for simila
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