Re: [R] ChAMP: champ.runCombat error with methylation 450k data

Champ is a BioConductor package. You should post to the Bioconductor Help, not here. Cheers, Bert Bert Gunter "Data is not information. Information is not knowledge. And knowledge is certainly not wisdom." -- Clifford Stoll On Mon, Dec 7, 2015 at 12:34 PM, Brian Smith wrote: > Hi, > > I w

[R] ChAMP: champ.runCombat error with methylation 450k data

Hi, I was trying to run COMBAT on methylation data, but keep on getting an error: Error in while (change > conv) { : missing value where TRUE/FALSE needed The error occurs irrespective of whether I give the entire or reduced (variation filter keeps only about 140k CpGs) datasets. Is there any o