Vallejo, Roger wrote:
> Dear R Users,
> In the expresso function, which combination of these methods for data
> pre-processing (when using affymetrix oligo arrays) is the best:
>
> bgcorrect.metod = rma rma2 mas
>
> normalize.method = qspline quantiles loess
>
> pmcorrect.method = pmonly subt
Damn, this was a cross-post (and I replied to all), apologies for my
re-cross-posting.
To Roger, the original poster: PLEASE do read the posting guide of
R-help before posting and NEVER EVER do crossposting again.
Thanks,
Uwe Ligges
Uwe Ligges wrote:
>
>
> Vallejo, Roger wrote:
>> Dear R Use
Dear R Users,
In the expresso function, which combination of these methods for data
pre-processing (when using affymetrix oligo arrays) is the best:
bgcorrect.metod = rma rma2 mas
normalize.method = qspline quantiles loess
pmcorrect.method = pmonly subtractmm mas
summary.method = liwong avgdif
Dear R Users,
In the expresso function, which combination of these methods for data
pre-processing (when using affymetrix oligo arrays) is the best:
bgcorrect.metod = rma rma2 mas
normalize.method = qspline quantiles loess
pmcorrect.method = pmonly subtractmm mas
summary.method = liwong avgdif
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