Re: [R] Error during working with wgcna and R

Hi, if you don't have enough memory to store the entire TOM within RAM, you cannot simply retrieve it and subset it. There are 3 options for what you want to do: 1. If all genes are in the same block, calculate the TOM from the block genes and subset it appropriately. This will exactly reproduce

Re: [R] Grouping clusters from dendrograms

Hi Julia, sorry for the very late reply, your original email was posted while I was on hiatus from R-help. I'm the author of the dynamicTreeCut package. I recommend that you try using the "hybrid" method using the cutreeDynamic function. What you observed is a known problem of the tree method (wh