library(GDD)
Or install Xvfb on your server
From: r-help-boun...@r-project.org [r-help-boun...@r-project.org] On Behalf Of
Jillian E Kozyra [jill...@gmail.com]
Sent: 13 March 2010 16:27
To: r-help@r-project.org
Subject: [R] Creating images without X11
De
Use the GDD library
From: r-help-boun...@r-project.org [r-help-boun...@r-project.org] On Behalf Of
Jillian E Kozyra [jill...@gmail.com]
Sent: 13 March 2010 16:26
To: r-help@r-project.org
Subject: [R] (no subject)
Dear Colleagues,
We are attempting to crea
aggregate(x[,1:2], by=list(factor=x$factor.level), mean)
From: r-help-boun...@r-project.org [r-help-boun...@r-project.org] On Behalf Of
Josh B [josh...@yahoo.com]
Sent: 13 March 2010 18:50
To: R Help
Subject: [R] Indexing a matrix within loops
Hi,
I was h
Mick
From: Uwe Ligges [lig...@statistik.tu-dortmund.de]
Sent: 13 March 2010 18:08
To: michael watson (IAH-C)
Cc: r-help@r-project.org
Subject: Re: [R] Problem building packages on windows:
/cygdrive/c/Rtools/bin/cp: target `xf-))' is not a directory
On 13.03.2010 18:34, michael watson (IA
anges.
From: Uwe Ligges [lig...@statistik.tu-dortmund.de]
Sent: 13 March 2010 17:30
To: michael watson (IAH-C)
Cc: r-help@r-project.org
Subject: Re: [R] Problem building packages on windows:
/cygdrive/c/Rtools/bin/cp: target `xf-))' is not a directory
On 13.
Dear R-Help
My OS is Windows CP, I'm not sure my sessionInfo() is relevant but here it is:
R version 2.10.1 (2009-12-14)
i386-pc-mingw32
locale:
[1] LC_COLLATE=English_United Kingdom.1252 LC_CTYPE=English_United
Kingdom.1252LC_MONETARY=English_United Kingdom.1252
[4] LC_NUMERIC=C
Fair enough, thanks for your time.
I will wait for my Linux PCs!
-Original Message-
From: Duncan Murdoch [mailto:murd...@stats.uwo.ca]
Sent: 16 September 2009 16:42
To: michael watson (IAH-C)
Cc: r-help@r-project.org
Subject: Re: [R] Memory in R on windows running 64bit XP
On 9/16/2009
__
From: Duncan Murdoch [murd...@stats.uwo.ca]
Sent: 16 September 2009 15:43
To: michael watson (IAH-C)
Cc: r-help@r-project.org
Subject: Re: [R] Memory in R on windows running 64bit XP
On 9/16/2009 10:16 AM, michael watson (IAH-C) wrote:
> Hi
> I'm running 32-bit R on Windows XP 64b
Hi
I'm running 32-bit R on Windows XP 64bit and the machine has 16Gb of RAM. The
help for memory.limit states:
If 32-bit R is run on some 64-bit versions of Windows the maximum value of
obtainable memory is just under 4GB.
So, using the help which states the size parameter can go up to 4095:
m
Hi
Sorry, I am clearly missing something here.
I want to read this file directly:
ftp://ftp.sanger.ac.uk/pub/mirbase/targets/v5/arch.v5.txt.gallus_gallus.
zip
I tried using
read.table(gzfile("ftp://ftp.sanger.ac.uk/pub/mirbase/targets/v5/arch.v5
.txt.gallus_gallus.zip"))
But I got an error:
Hi
I want to install R from a script, so am following
http://cran.r-project.org/bin/windows/base/rw-FAQ.html#Can-I-customize-t
he-installation_003f.
I first installed R with the /SAVEINF="r_install_config.txt" flag and it
created a nice text file for me - perfect.
I then uninstalled R, and re-
Dear All
I have a question about the hypergeomteric distribution.
Example 1: I have a universe of 6187 objects, and 164 have a particular
attribute, therefore 6187-164 do not have that attribute. I sample 249
of those objects, and find that 19 have that attribute. I get a p-value
here (looking
Following on from my previous mail!
plot(1:10,1:10)
mtext("title", side=3, adj=0, font=3, cex=1.5)
This works as expected and puts the font in italics.
tag <- "A)"
suffix <- "genea::"
plot(1:10,1:10)
mtext(bquote(.(tag) ~ Delta * .(suffix)), side=3, adj=0, font=3,
cex=1.5)
Here, the font isn't
nal Message-
From: Gabor Grothendieck [mailto:[EMAIL PROTECTED]
Sent: Tue 05/08/2008 6:18 PM
To: michael watson (IAH-C)
Cc: r-help@r-project.org
Subject: Re: [R] Greek characters in plots
Try bquote / substitute as has been mentioned:
tag <- "A)"
suffix <- "stbA::cat
quot;\u0394", b)
Error: invalid \u sequence
This is on both Rgui at home and at work (Windows Vista and R 2.6 at home,
Windows XP and R 2.7 at work)
Thanks again, Gabor's suggestion worked.
-Original Message-
From: Prof Brian Ripley [mailto:[EMAIL PROTECTED]
Sent:
Or, maybe I could just draw it with lines()
-Original Message-
From: [EMAIL PROTECTED] on behalf of michael watson (IAH-C)
Sent: Tue 05/08/2008 1:37 PM
To: Prof Brian Ripley
Cc: r-help@r-project.org
Subject: Re: [R] Greek characters in plots
OK, I am definitely struggling here
and strings for plotting?
Thanks once again
Mick
-Original Message-
From: Prof Brian Ripley [mailto:[EMAIL PROTECTED]
Sent: 05 August 2008 12:40
To: michael watson (IAH-C)
Cc: Henrique Dallazuanna; r-help@r-project.org
Subject: Re: [R] Greek characters in plots
On Tue, 5 Aug 2008, michae
Excellent! I even tried DELTA but not Delta
Now, how do I go about pasting that with some text that I have in various other
variables?
-Original Message-
From: Henrique Dallazuanna [mailto:[EMAIL PROTECTED]
Sent: 05 August 2008 12:17
To: michael watson (IAH-C)
Cc: r-help@r
Hi
I am running an R script that creates 100s of graphs, and I need to use
the greek CAPITAL letter delta in the mtext() function.
I got as far as expression(delta) but this gives me the lowercase
version.
Can anyone help? I'm using R 2.7 on Windows XP
Mick
Head of Informatics
Institute for A
I'd recommend outputting either as pdf or as a windows metafile
-Original Message-
From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED]
On Behalf Of Karin Lagesen
Sent: 10 March 2008 09:54
To: r-help@r-project.org
Subject: [R] hclust graphics - plotting many points
Hello.
I have a distanc
Why are you using "skip=2"?
Try:
read.csv(""c://test.csv",header="T",eomment.char="")
-Original Message-
From: [EMAIL PROTECTED] on behalf of Claire_6700
Sent: Sun 09/03/2008 12:55 PM
To: r-help@r-project.org
Subject: [R] Two sample t-test
Hi,
I want to perform t-test in R for each
Hi
I'm using 2.6.0 on Windows XP SP2. I realise I'm on an old version,
please tell me if the problem is fixed in the newer versions.
When I try and use the graphics window menu to save a graph as PDF, I
get the following error, and no PDF produced
Error: Invalid font type
In addition: Warning m
Dear All
I will try and keep this succinct! The data is counts of a particular
molecule in different cell types taken from the same 5 subjects. The
data are paired as they come from the same subject. The aim is to
determine whether the cell types differ in terms of the abundance of
each of the
It will be either:
1) line 528 contains a quote character somewhere: ' or "
2) line 528 contains a comma in one of the fields, not as a field separator
3) line 528 contains a comment character #
-Original Message-
From: [EMAIL PROTECTED] on behalf of Julian Burgos
Sent: Wed 12/12/2007 6:
I opened this hoping someone had installed R on windows mobile or simbian :(
From: [EMAIL PROTECTED] on behalf of Duncan Murdoch
Sent: Tue 04/12/2007 10:54 PM
To: Tom Backer Johnsen
Cc: [EMAIL PROTECTED]
Subject: Re: [R] Is R portable?
On 04/12/2007 5:25 PM
Been through the mill on this one ;)
Prof Ripley found a workaround:
http://tolstoy.newcastle.edu.au/R/e2/help/07/05/17402.html
Still haven;t found the right fonts though ;)
-Original Message-
From: [EMAIL PROTECTED] on behalf of Patrick Connolly
Sent: Thu 22/11/2007 7:33 PM
To: Correia
Hi
Apologies for this question.
I have read the help for GDD and font mapping, and it tells me that the
config file, /usr/lib/R/library/GDD/fonts/basefont.mapping is
responsible for mapping fonts to the GDD library.
However:
> .GDD.font()
[1] "/usr/X11R6/lib/X11/fonts/Type1/l048013t.afm"
[2] "/
The Disney way:
par(mar=c(2,8,2,2))
barplot(rep(1,10), axes=FALSE, names=rev(paste(breaks[1:10], breaks[2:11],
sep="-")), horiz=TRUE, col=heat.colors(10), las=2)
From: [EMAIL PROTECTED] on behalf of Petr PIKAL
Sent: Wed 24/10/2007 11:33 AM
To: Jonas Öster
C
I looked at this a while ago - what are you trying to do? ie what are you
correlating?
From: [EMAIL PROTECTED] on behalf of Jorge Ivan Velez Valbuena
Sent: Thu 18/10/2007 12:20 AM
To: r-help
Subject: [R] Correlation matrices comparison
Hi all,
Somebody knows
PROTECTED]
Sent: 15 October 2007 21:41
To: michael watson (IAH-C)
Cc: Charles C. Berry; r-help@r-project.org
Subject: Re: [R] Error: X11 cannot allocate additional graphics colours.
This is not a X server version issue.
There are Linux system (not R) display settings that will dictate the
's looking for.
-Original Message-
From: Prof Brian Ripley [mailto:[EMAIL PROTECTED]
Sent: 16 October 2007 07:29
To: michael watson (IAH-C)
Cc: Paul Gilbert; r-help@r-project.org
Subject: Re: [R] Error: X11 cannot allocate additional graphics colours.
On Mon, 15 Oct 2007, michae
e 'man Xvfb' for more information for the latter scenario.
>
> HTH,
>
> Marc Schwartz
>
> On Mon, 2007-10-15 at 20:53 +0100, michael watson (IAH-C) wrote:
>> Thanks for the response...
>>
>> My confusion about plot stems from the fact I am plotting 82
stall X version foo, available from
http://www.foo.com/bar.rpm...)
-Original Message-
From: Charles C. Berry [mailto:[EMAIL PROTECTED]
Sent: Mon 15/10/2007 7:54 PM
To: michael watson (IAH-C)
Cc: r-help@r-project.org
Subject: Re: [R] Error: X11 cannot allocate additional graphics colou
OK, tried google, got very, very lost. There are lots of different
packages out there.
Can anyone tell me where I can download the "Unicode X11 (meta-)fonts"
for Red Hat that R needs?
-Original Message-
From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED]
On Behalf Of michael wat
Thank you Brian, setting the locale using.
Sys.setlocale("LC_CTYPE","en_GB")
Meant that my test plot command worked fine.
Will now install Unicode X11 fonts
-Original Message-
From: Prof Brian Ripley [mailto:[EMAIL PROTECTED]
Sent: 15 October 2007 14:12
To: micha
Dear All
Another one I have touched on before with a much older OS and version.
My sessionInfo() is:
> sessionInfo()
R version 2.5.1 (2007-06-27)
i686-redhat-linux-gnu
locale:
LC_CTYPE=en_GB.UTF-8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=en_GB.U
TF-8;LC_MONETARY=en_GB.UTF-8;LC_MESSAGES=en_G
Dear All
I posted a similar question quite some time ago, but that was on an old
OS and an old version of R. This time I have RHEL 4, which is still
supported as an OS, and R 2.5.1 which is not *that* old.
My sessionInfo() gives:
> sessionInfo()
R version 2.5.1 (2007-06-27)
i686-redhat-linux-g
If you just want a coloured representation of your distance matrix, use image()
?image()
If you want to cluster your original data and show the original data (not the
distances) as a heatmap then use heatmap(), but you should use something like
hclust() to cluster the data first.
___
We need both sep and collapse to deal with situations where we are
pasting two character vectors and also where we are pasting just one.
paste(c("T","i","o","s"), c("his ", "s ", "ne ",
"entence."),sep="",collapse="")
-Original Message-
From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED]
O
For 1, start off with package.skeleton
Then http://www.biostat.wisc.edu/~kbroman/Rintro/Rwinpack.html
From: [EMAIL PROTECTED] on behalf of Edna Bell
Sent: Mon 24/09/2007 3:40 PM
To: [EMAIL PROTECTED]
Subject: [R] making R packages and compacting an entire R set
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