Re: [R] vector allocation error

2010-08-26 Thread josquint
The answer is indeed a LINUX cluster with more memory. Thanks, Josquin -- View this message in context: http://r.789695.n4.nabble.com/vector-allocation-error-tp2333299p2339451.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-p

Re: [R] using an objects contents in a text string

2010-08-26 Thread josquint
Thankyou!!! I knew this was so simple and I had tried paste but with the wrong syntax so I moved on. This opens a whole new world to me!! -- View this message in context: http://r.789695.n4.nabble.com/using-an-objects-contents-in-a-text-string-tp2338061p2339437.html Sent from the R help mailin

Re: [R] using an objects contents in a text string

2010-08-25 Thread josquint
ALSO I have had a play with cat() but have also not got this to work e.g. write(x, file = cat(input.variable.name , file = "", sep = "_data.txt", ), ...) but this does not seem to work and I'm sure it is not the correct use of cat() Thanks. -- View this message in context: http

[R] using an objects contents in a text string

2010-08-25 Thread josquint
Hi, I am (trying) to write a script that will execute a set of functions and then to write some of the output data frames to file. I am wanting to be able to just change a single object and have this them populate through the functions etc. I have no trouble making this work when the function is

[R] vector allocation error

2010-08-21 Thread josquint
I am running and analysis of sequencing data uisng the EdgeR package. I have received the following error: Using grid search to estimate tagwise dispersion. Error: cannot allocate vector of size 307.3 Mb indicating the memory allocation is too small. How would I change this confiuration in R so