Re: [R] Pairwise testing with pairwise.prop.test

Thank you Stephen and Peter for your code and your answers! Stephen, your NaN explanation makes sense - thank you for putting it so clearly. Cheers, Jenny On Tue, Apr 2, 2019 11:10 AM, peter dalgaard pda...@gmail.com wrote: >> My questions:1) Why is there a "-" instead of a

Re: [R] Pairwise testing with pairwise.prop.test

Thank you very much David, your answers are so clear and helpful!! Have a great week. Cheers, Jenny On Mon, Apr 1, 2019, 11:53 AM David L Carlson, wrote: > Inline > > > David L Carlson > Department of Anthropology > Texas A&

[R] Pairwise testing with pairwise.prop.test

Hi all, I have a few questions about the pairwise.prop.test function. I run the test using on the attached dataset (EggMortNoTemp) using the following code: EggMatrix<-as.matrix(EggMortNoTemp) #making the egg mortality data a matrix. pairwise.prop.test needs it to be a matrix EggResults<-pairwis

Re: [R] Glitch in Kruskal-Wallis test?

-- >> David L Carlson >> Department of Anthropology >> Texas A&M University >> College Station, TX 77843-4352 >> >> -Original Message- >> From: R-help On Behalf Of Jenny Liu >> Sent: Saturday, December 22, 2018 7:10 AM >> To: Michae

Re: [R] Glitch in Kruskal-Wallis test?

of an alternative? I have already tested for heteroscedasticity using the Breusch-Pagan test. Thanks again, Jenny On Dec 22, 2018 7:38 AM, "Michael Dewey" wrote: Dear Jenny What exactly do you think you are testing here? You are telling K-W you have seven groups each with a single value w

[R] Glitch in Kruskal-Wallis test?

Hi everyone, I have been running a K-W test with the attached data, PupMort1. My code: kruskal.test(Prop~Temp,data=PupMort1) However, I found that I get the exact same result when I change the x-values, as in the attached data PupMort2. Test run with PupMort1Kruskal-Wallis rank sum testdata:  Prop

[R] A quick question on devRate package

r, when I enter >devRateInfo(eq=campbell_74) There are only 3 entries for Diptera, and none of them are Cecidomyiidae. Am I doing something wrong, or missing something? I read through the instruction manual but it's definitely possible I misunderstood. Thanks for your time! Cheers,Jenny Li

[R] Do there need to be the same number of y-values for each x-value when using tapply?

going wrong! https://stackoverflow.com/questions/51119314/using-tapply-when-you-have-different-n-for-each-treatment Thanks very much, Jenny [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://

Re: [R] JGR not installed. Attempting to install from CRAN...

what should i do now? thanks Jen Jenny Coetzee (PhD Candidate) Head of Prevention in Key Populations & Head of the Soweto Sex Worker Project Perinatal HIV Research Unit (PHRU) New Nurses Home Chris Hani Baragwanath Academic Hospital Soweto B: +27 11 989 9821 M: +27 84 761 1193

Re: [R] JGR not installed. Attempting to install from CRAN...

Loris, thank you thank you so much!!! do you know which CRAN mirror i select? There are loads - all related to various countries.. so appreciate the help Jenny Jenny Coetzee (PhD Candidate) Head of Prevention in Key Populations & Head of the Soweto Sex Worker Project Perinatal HIV Rese

[R] JGR not installed. Attempting to install from CRAN...

help please..? thanks Jen Jenny Coetzee (PhD Candidate) Head of Prevention in Key Populations & Head of the Soweto Sex Worker Project Perinatal HIV Research Unit (PHRU) New Nurses Home Chris Hani Baragwanath Academic Hospital Soweto B: +27 11 989 9821 M: +27 84 761 1193 E: coetz...@phru.c

[R] check broken links in a column

pulling information from a website vs. just using a column of url in a table. I would like the results in a readable table format that tells me which links do not work. I do not want all of the images opened on my machine, just the links checked. Thank you so much for your time. Jenny VP -- Jenny

[R] Question about Imager

automate the process and save a lot of time and clicking. Thank you for your time, Jenny Vander Pluym -- Jenny Vander Pluym NOAA's National Centers for Coastal Ocean Science Research and Communications Specialist 101 Pivers Island Rd. Beaufort, NC 28516-9722 cell: 252.728.8777 What is NCCOS

[R] printing a data.frame that contains a list-column of S4 objects

Is there a general problem with printing a data.frame when it has a list-column of S4 objects? Or am I just unlucky in my life choices? I ran across this with objects from the git2r package but maintainer Stefan Widgren points out this example below from Matrix as well. I note that the offending o

[R] weighted network centrality measures by network size

Dear R-help, My name is Jenny Jiang and I am a Finance Honours research student from the University of New South Wales Australia. Currently my research project involves the calculating of some network centrality measures in R, which are degree, closeness, betweenness and eigenvector. However

[R] (no subject)

Hello, My name is Jenny Jiang and I am a Finance Honours research student from the University of New South Wales Australia. Currently my research project involves the calculating of some network centrality measures in R, which are degree, closeness, betweenness and eigen vector. However I am

[R] Calculation of weighted network centrality measures

Hello, My name is Jenny Jiang and I am a Finance Honours research student from the University of New South Wales Australia. Currently my research project involves the calculating of some network centrality measures in R, which are degree, closeness, betweenness and eigen vector. However I am

[R] Calculation of weighted network centrality measures

Hello, My name is Jenny Jiang and I am a Finance Honours research student from the University of New South Wales Australia. Currently my research project involves the calculating of some network centrality measures in R, which are degree, closeness, betweenness and eigen vector. However I am

[R] Calculation of network centrality measures weighted by network size

Hello, My name is Jenny Jiang and I am a Finance Honours research student from the University of New South Wales Australia. Currently my research project involves the calculating of some network centrality measures in R, which are degree, closeness, betweenness and eigen vector. However I am

[R] outputting R loop to a csv file

Hello, My name is Jenny Jiang and I am a Finance Honours research student from the University of New South Wales. Currently my research project involves the calculating of some network centrality measures in R by using a loop, however I am having some trouble outputting my loop results to a

[R] Error message for corAR1()

Hi, I am trying to answer the see if density.km (response) is affected by Direction (continuous, integer), Layer (nominal with 12 levels) and direction (nominal with 8 levels). There is an interaction between Layer and Direction. Platform.field is a list of 9 different platforms and is being t

[R] modifications for ONLY local repository?

running on the head node. Thanks for any help or suggestions, Jenny Jenny Drnevich, Ph.D. Functional Genomics Bioinformatics Specialist High Performance Biological Computing Program and The Roy J. Carver Biotechnology Center University of Illinois, Urbana-Champaign NOTE NEW OFFICE LOCATION

[R] Raster projection shift Biomod

on is everything getting pushed to? Thanks for any help or suggestions in the right direction. Jenny The Royal Botanic Gardens, Kew is a non-departmental public body with exempt charitable status, whose principal place of business is at Royal Botanic Gardens

Re: [R] climstats 'spatial_sync_raster' function

The function I have been trying to use is: spatial_sync_raster The maintainer has let me know that this is available in his spatial.tools package, which you can get from CRAN: install.packages("spatial.tools") problem solved. Thanks jenny -Original Message- From: David

Re: [R] climstats

patial_sync_raster" On Sep 30, 2013, at 10:39 AM, Prof Brian Ripley wrote: > On 30/09/2013 18:19, David Winsemius wrote: >> >> On Sep 30, 2013, at 3:25 AM, Jenny Williams wrote: >> >>> I have been trying to download the climstats package: >>> https://

[R] climstats

I have been trying to download the climstats package: https://r-forge.r-project.org/R/?group_id=861 but it doesn't seem to run on R 3.0.2 or 3.0.1 and the zipfile is empty. Does anyone know the status of this package or where I can download it. Thanks ** Jenny Williams Sp

[R] Biomod model access

greatly appreciated. FYI the vignette does not seem to work: http://127.0.0.1:15505/library/biomod2/doc/index.html ** Jenny Williams Spatial Information Scientist, GIS Unit Herbarium, Library, Art & Archives Directorate Royal Botanic Gardens, Kew Richmond, TW9 3AB, UK Te

Re: [R] For loop output

6 max values : 995 -Original Message- From: David Carlson [mailto:dcarl...@tamu.edu] Sent: 08 August 2013 18:04 To: Jenny Williams; r-help@r-project.org Subject: RE: [R] For loop output It's not clear how you are pl

[R] For loop output

ied to individual.proj.quote to removed the final comma from the string substr(individual.proj.quote, 1, nchar(individual.proj.quote)-1) Any help or pointers would be greatly appreciated, no amount of extensive google searches have been fruitful so far. ** Jenny Williams Spatial

[R] Please remove my email address from the list

Hi, Please remove my email address from the list. Thanks a lot! Sent from my iPad __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide

[R] change in default behavior of ?functionname in R 2.10?

of a) filename (since the documentation has been much ignored). I'd appreciate any help, as the html-style help is so much more convenient! Thanks, Jenny > sessionInfo() R version 2.10.0 (2009-10-26) i386-pc-mingw32 locale: [1] LC_COLLATE=English_United States.1252 [

[R] How to run Rcmdr in Mac Os X Tiger?

e: In fun(...) : couldn't connect to display ":0" Error : .onAttach failed in 'attachNamespace' Error: package/namespace load failed for 'Rcmdr' jenny [[alternative HTML version deleted]] __ R-help@r-proje

[R] recursive function, how to avoid list structure in return value

ion could be fixed. Can anyone show me show? Thanks, Jenny Bryan Demo of my problem -- (Note: although my question has nothing to do with hierarchical clustering per se, my example does assume knowledge of the 'merge' object.) ## faking the key aspects of an hclust object myClus

Re: [R] trouble printing from graphics device in R 2.7.2

Hi Tom, No, there are binaries for both the patched and development versions. On the page on CRAN where you normally download the windows binary (e.g., http://cran.wustl.edu/bin/windows/base/), there are links at the top to the patched and devel builds. HTH, Jenny At 10:31 AM 9/17/2008

[R] How to replicate probit regression analysis done by the priprobit software using R?

I wonder if anyone is familiar with the priprobit software (Sakuma M. 1998. Probit analysis of preference data. Appl Entomol Zool. 33:339–34). I would like to replicate the same analysis and output in R. Of note, I want to determine the analytical sensitivity, defined as 95% cut-off value. j

Re: [R] trouble printing from graphics device in R 2.7.2

Thank you! It works now. It's good to know that it was a bug and not something stupid that I was doing. Cheers, Jenny At 01:32 PM 9/12/2008, Prof Brian Ripley wrote: I've tracked this down to the clipping bug fix reported in the CHANGES file. There is another bug fix in R-devel tha

[R] trouble printing from graphics device in R 2.7.2

archives about this... so what's going on and how do I fix it so I can continue to use 2.7.2? Thanks, Jenny > sessionInfo() R version 2.7.2 (2008-08-25) i386-pc-mingw32 locale: LC_COLLATE=English_United States.1252;LC_CTYPE=English_United States.1252;LC_MONETARY=English_United State

Re: [R] NLME questions -- interpretation of results

0.6612426 0.7501786 0.8498928 0.6274681 0.7118615 My question is how to get the fitted values for specified group levels (eg. values for AB/E)? Thank all very much! Jenny >Hi Jenny, >I try your code but I did not get in converge in fm3 (see the below). >For the first question, you

[R] NLME questions -- interpretation of results

s and suggestions are appreciated. Have a good day! Jenny __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.

Re: [R] Which distribution best fits the data?

Thanks Ben - will give MASS package a look and try the boxcox function! Appreciate your time in answering my question :o) Jenny On Mon, 30 Jun 2008, Ben Bolker wrote: -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 ~Much better. ~ If m is your linear regression model, ~ * boxcox(m

Re: [R] Which distribution best fits the data?

suitable transformation to make the data normal. Any more tips now that you have a few more details perhaps? :o) Thanks for your time, Jenny On Mon, 30 Jun 2008, Ben Bolker wrote: Jenny Barnes mssl.ucl.ac.uk> writes: Dear R-help community, Does anybody know of a stats function in R t

[R] Which distribution best fits the data?

s you (given a timeseries) what the distribution is. Any help/advice will be greatly appreciated, All the best, Jenny Barnes [EMAIL PROTECTED] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting

Re: [R] How to plot wind direction and strength field

Thanks Greg, I'll give it a whirl and let you know how it goes (although it might not be till after the bank holiday weekend now sorry for delay!) Thanks for replying and spending time on this problem. All the best, Jenny On Thu, 1 May 2008, Greg Snow wrote: Does the following do

Re: [R] How to plot wind direction and strength field

Hi Jim, I forgot to say that I don't want to create curved arrows, just straight - and I would like them to be proportional to the magnitude :o) Thanks again for your time! Jenny On Tue, 29 Apr 2008, Jenny Barnes wrote: Hi Jim, I would like to plot something like figure 2 on this we

Re: [R] How to plot wind direction and strength field

ut it's similar magnitude and the longitude direction is u and latitude direction is v as in the real data. I really appreciate your help! Jenny On Tue, 29 Apr 2008, Jim Lemon wrote: Jenny Barnes wrote: Hi Jim, I would like to plot something like figure 2 on this webpage: http://

Re: [R] How to plot wind direction and strength field

..Would it help to give you a couple of grid squares worth of data for one year? Thanks, Jenny On Tue, 29 Apr 2008, Jim Lemon wrote: Jenny Barnes wrote: Dear R-help community, I have searched through the archives and not been able ot find any advice on how to plot a wind field with one

[R] How to plot wind direction and strength field

ta in arrays of [lon,lat,uwind] and [lon,lat,vwind] so it is broken down into u and v components. How do I plot it though?!?! Any suggestions very wecome indeed - I seem to have hit a brick wall. All the best, Jenny ~~ Jennifer Barnes PhD student: long

[R] Transforming data

My data look like this: Col1 1 2 3 4 5 6 ... My questions are: (1) How do I get it in the following format? Col1 Col2 12 34 56 ... (2) How do I transform the data in 2 column format above back to the single column format? Thanks in advance for your reply!

Re: [R] thicker axis in levelplot

Deepayan, You are a star - thank you that worked perfectly! Many thanks, Jenny On 11/1/07, Jenny Barnes <[EMAIL PROTECTED]> wrote: > Thank you for your reply - I'm afriad that just doesn't work, any other > suggestions or is there something I need to do WITH this com

Re: [R] thicker axis in levelplot

Thank you for your reply - I'm afriad that just doesn't work, any other suggestions or is there something I need to do WITH this command to make it work? I really am stuck on this one and would appreciate any help offered, Jenny From: "jim holtman" <[EMAIL PROTEC

[R] thicker axis in levelplot

(I realise that the above script does not include a colorkey component but my actual work does). Many thanks, Jenny Barnes __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http:

Re: [R] Sample selection problem

Hi, Can't you do something like: x <- c(1,1,1,1,1,1,0,0,0,0) sample(x, 30, T) Best Wishes, Jenny >X-Spam-Checker-Version: SpamAssassin 3.2.3 (2007-08-08) on hypatia.math.ethz.ch >X-Spam-Level: >X-Spam-Status: No, score=0.0 required=5.0 tests=DKIM_SIGNED, DKIM_VERIFI

Re: [R] P-value

Hi, why don't you try try ks.test(VeriSeti1, VeriSeti2)$p.value All the best Jenny >How can i print only the P-Value of the kolmogorov smirnov test? > > >> ks.test(VeriSeti1, VeriSeti2) > >Two-sample Kolmogorov-Smirnov test > >data: VeriSeti1 and Veri