Re: [R] Error: cannot allocate vector of size 1.8 Gb

2008-12-23 Thread iamsilvermember
>What are you going to do with an agglomerative hierarchical clustering of 22283 objects? It will not be interpretible. As a matter of fact I was ask to do a clustering analysis on gene expression. Something http://www.ncbi.nlm.nih.gov/projects/geo/gds/analyze/analyze.cgi?datadir=UCorrelationUP

Re: [R] Error: cannot allocate vector of size 1.8 Gb

2008-12-22 Thread iamsilvermember
I hope the following info will help, thanks again! > sessionInfo() R version 2.7.1 (2008-06-23) x86_64-redhat-linux-gnu locale: LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TE

[R] Error: cannot allocate vector of size 1.8 Gb

2008-12-22 Thread iamsilvermember
> dim(data) [1] 2228319 > dm=dist(data, method = "euclidean", diag = FALSE, upper = FALSE, p = 2) Error: cannot allocate vector of size 1.8 Gb Hi Guys, thank you in advance for helping. :-D Recently I ran into the "cannot allocate vector of size 1.8GB" error. I am pretty sure this is not