Re: [R] R commander (Rcmdr) won't start [SOLVED]

e pros and cons of graphical interfaces. Let me just say you're doing an excellent service to the community, both with your package and your replies to this forum, which shows you're a really kind person and deserve all our appreciation. Best wishes Gabriele Pallotti (Italy) Il giorno ven

[R] R commander (Rcmdr) won't start [SOLVED]

I managed to get Rcmdr working simply by deleting the .Rdata and .Rhistory file from the work directory. It is rather weird, as I thought they only contained data and settings, but probably some of these belonged to the older version of R/Rcmdr and were not compatible with the new version. I'll kee

[R] R commander (Rcmdr) won't start

Hallo I've been using R and R commander (Rcmdr) for some years, never had problems. I'm on Xubuntu 16.04. Yesterday I updated R from 3.4.4 to 3.6.1 and all sorts of problems occurred. Firstly I completely removed R from my system, including old directories (with some hiccups, I must admit). Then I

Re: [R] XML to CSV

They are attributes, not nodes so, if I understood the question: "//DischargeMedication/Medication/@MedAdmin" "//DischargeMedication/Medication/@MedID" should do. HTH, Gabriele From: Andrew Lachance [mailto:alach...@bates.edu] Sent: Wednesday, January 25, 2017 3:12 PM To

Re: [R] XML to CSV

Hello Andrew, as you are "clean slate" anyway in handling XML files, you could take a look to XSLT processing -- also an off-topic area. There are free tools available around, and many examples of "XML to CSV XSLT" on StackOverflow. HTH, Gabriele -Original Messag

Re: [R] Presentation tables in R (knitr)

I found also knitr + html + the ReporteRs package a good combination, and less intimidating than Latex. Have a look at their FlexTable tool. HTH, Gabriele -Original Message- From: Tom Wright [mailto:t...@maladmin.com] Sent: Tuesday, November 25, 2014 9:12 PM To: r-help@r-project.org

Re: [R] converting XML document to table or dataframe

Hello, R is good at handling XML, but in this case I would rather do the first step with an XSLT transformation, e.g. with Saxon, possibly to a CSV file. HTH, Gabriele -Original Message- From: Anika Masters [mailto:anika.mast...@gmail.com] Sent: Tuesday, January 29, 2013 3:01 AM To: r

Re: [R] Create a Data Frame from an XML

\n', sep="")) } sink(paste('my_file.xml', sep="")) cat ('\n') cat ('\n') # invisible avoids returning a NULL in the file invisible(apply(my_df, 1, buildEntry)) cat ("" ) sink() And it took very little time. HTH, Gabriele ---

Re: [R] randomLCA

model? thanks gabriele 2012/8/28 Ingmar Visser : > use str(dentistry.lca2) to see all values of the output; among them a value > np for number of parameters, in this case 5*2 for the 5 binary items of 2 > classes + 1 for the class proportions, total 11. > hth, Ingmar > > On Mon,

[R] randomLCA

Can anybody, please, explain me how many parameter are estimated using randomLCA? For examples, model "dentistry.lca2random" estimate 1 scale (or variance, b_j) parameter and 2 position parameters (a_cj)? Doesn't it? Do I need at least 4 diagnostic tests for such a model? What happens if I

[R] Correspondence Analysis of Textual Data and Visualization of Correspondence Results in a 3d plot with the ‘ca’ package.

3d visualization of the results? Thanks for your support, Gabriele -- View this message in context: http://r.789695.n4.nabble.com/Correspondence-Analysis-of-Textual-Data-and-Visualization-of-Correspondence-Results-in-a-3d-plot-wit-tp3676450p3676450.html Sent from the R help mailing list

[R] how can I plot bar plots with all the bars (negative and positive) in the same direction????

m the minimum pointing upwards? Thanks! Gabriele Zoppoli, MD Ph.D. Fellow, Experimental and Clinical Oncology and Hematology, University of Genova, Genova, Italy Guest Researcher, LMP, NCI, NIH, Bethesda MD Work: 301-451-8575 Mobile: 301-204-5642 Email: zoppo...@mail.ni

[R] how to create automatically names for vectors in a loop?

Hi, I want to generate a number of vectors and store them with different names, like this: x=1 while (x<100) { vector#x# = rnorm(100) x=x+1 } where each vector has, at its hand, instead of #x# a number which goes from 1 to 99. How can I do this? Thanks Gabriele Zoppoli, MD P

Re: [R] "order" issue

self and I misuse some words, hope it's clear anyway) that a matrix is all numeric? by doing as.numeric(x), it transforms everything in a long colum of number, but loses the matrix structure... Thank you all guys! You're really precious! Now, how can you "explain" (sorry

Re: [R] "order" issue

crazy stuff!!! I tried to reload the txt file, and now it's working... this is the original (attached) thanks! Gabriele Zoppoli, MD Ph.D. Fellow, Experimental and Clinical Oncology and Hematology, University of Genova, Genova, Italy Guest Researcher, LMP, NCI, NIH, Bethesda MD Work: 30

Re: [R] "order" issue

.miR.204" "hsa.miR.210" "Tissue" It doesn't make much sense to me... I would like to have the second column ordered from max to min, or from min to max (with the argument decreasing=TRUE), but "order" seems to reorder everything without considering

Re: [R] "order" issue

68" "0.67884" "Lung" 64 "RE:RXF_393" "-3.49615" "2.59144" "Renal" 22 "CO:HCT_15" "-3.45342" "0.16357" "Colon" 12 "BR:T47D""-3.41228" &q

[R] "order" issue

0.03737 CNS 45 ME:MDA_N 0.21077 0.05502 Melanoma 50 ME:UACC_62 0.52503 0.1605 Melanoma 46ME:SK_MEL_2 0.55255 -1.6667 Melanoma 47 ME:SK_MEL_28 1.7425 1.45266 Melanoma 48ME:SK_MEL_5 1.74749 -1.47817 Melanoma Gabriele Zopp

[R] memory limit

RAM values (3 Gb recognized by Windows). The isse is, when I try to do memory.limit (size = 3000 ) the error doesn't resolve, and when I type > memory.size () I always get [1] 26.85 I'm confused here. Can anybody help me? Thanks! Gabriele Zoppoli, MD Ph.D. Fellow, Experimen

Re: [R] 3D version of triax.plot (package plotrix)

Hi Jim, thanks! With just the rgl package I cannot do that. For the moment, I merged two values into one and use triax.plot in the package plotrix, but that's not fully satisfactory. If you find something, let me know, thank you a lot! Gabriele On Mon, May 3, 2010 at 2:29 PM, Jim Lemon

[R] 3D version of triax.plot (package plotrix)

lp me! Best, Gabriele Esposito __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.

[R] cell-based high-throughput chemical compound screens package?

Hi I'm looking for a package to perform quality control, normalization and analysis of high throughput cell-based chemical screens. I know that the cellHTS2 package provides this for siRNA screens. Does anybody know if something like what I'm looking for exists? Thank you! Gabrie

[R] simple question

Hi how can I find, in a vector of characters, which is the most frequent one? Thanks Gabriele Zoppoli, MD Ph.D. Fellow, Experimental and Clinical Oncology and Hematology, University of Genova, Genova, Italy Guest Researcher, LMP, NCI, NIH, Bethesda MD Work: 301-451-8575 Mobile: 301-204-5642

[R] cell-based high-throughput chemical compound screens package?

Hi I'm looking for a package to perform quality control, normalization and analysis of high throughput cell-base chemical screens. I know that the cellHTS2 package provides this for siRNA screens. Does anybody know if something like what I'm looking for exists? Thank you! Gabrie

[R] exporting rotating plot into Powepoint

e",neval=100,phi=30,main="",xtrim=-0.2) Thanks! Gabriele Zoppoli, MD Ph.D. Fellow, Experimental and Clinical Oncology and Hematology, University of Genova, Genova, Italy Guest Researcher, LMP, NCI, NIH, Bethesda MD Work: 301-451-8575 Mobile: 301-204-5642 Email

[R] help with Gantt chart

/04/01","2012/07/01","2010/10/01"),format=Ymd.format)) vgridlab<- c("Jan","Feb","Mar","Apr","May","Jun","Jul","Aug","Sep","Oct","Nov","Dec&

[R] how to do calculations in data matrices?

substitute it with 1/a I know that for some of you it must be overeasy, but I swear I googled for two hours with keywords "operations", "calculations", "data matrices", "data tables", and "CRAN", and I didn't find anything useful. Thank yo

Re: [R] logical operations with lists

he redundant rows with: > A<-unique(A) Guess I'm doing something really wrong here... Sorry for the inexperience, I'm trying to improve... Gabriele Zoppoli, MD Ph.D. Fellow, Experimental and Clinical Oncology and Hematology, University of Genova, Genova, Italy Guest Researcher

[R] logical operations with lists

Sorry, maybe it's easy but I haven't found anything useful: how can I obtain a list C that contains all the members in the list B that are not in list A? This are lists of nanes, not numbers! Thank you Gabriele Zoppoli, MD Ph.D. Fellow, Experimental and Clinical Oncology and

[R] permutation analysis with randomly chosen subsets of a matrix

pecified subset and randomly chosen ones from the "mother" list. How could I do that? What would be an appropriate statistical test? Thank you for your help! Gabriele Zoppoli, MD Ph.D. Fellow, Experimental and Clinical Oncology and Hematology, University of Genova, Genova, Italy Guest Re

[R] help on Venn's diagram

r inside each intersection. I think the issue lyes in the non-numeric nature of the list, but I don't know if a solution for this exists... If anybody can help, this would be a great thing. Thanks! Gabriele Zoppoli, MD Ph.D. Fellow, Experimental and Clinical Oncology and Hematology, Uni

[R] question about transpose

Hi all, if I transpose a matrix with t(data), the newly created colums do not appear to have the first row as header. How can I do to have all the newly created columns have their first row as a header? Thanks Gabriele Zoppoli, MD Ph.D. Fellow, Experimental and Clinical Oncology and

[R] help on drawing right colors within a grouped xyplot (Lattice)

3 9.522 12.362 49Renal3 9.487 12.030 50Renal3 8.322 12.798 51Renal3 9.359 12.714 52Renal3 11.611 13.344 53Renal3 9.663 12.004 54Renal3 9.819 13.214 Please help me Thank you so much Gabriele Zoppoli, MD Ph.D. Fellow, Experimental and

[R] how to create a histogram from a matrix?

ble",header=TRUE,sep="\t") >histogram(table) Please help me!!! Thanks Gabriele Zoppoli, MD Ph.D. Fellow, Experimental and Clinical Oncology and Hematology, University of Genova, Genova, Italy Guest Researcher, LMP, NCI, NIH, Bethesda MD Work: 301-451-8575 Mobile:

Re: [R] run R script automatically by double-clicking WinXP desktopicon

Hello Chris, I had the same problem, and I ended up driving R Gui through an Autoit script, see http://www.autoitscript.com/autoit3/ Regards, Gabriele Franzini -Original Message- From: cr...@binghamton.edu [mailto:cr...@binghamton.edu] Sent: 22 September 2009 19:37 To: r-help@r

Re: [R] R connectivity with Oracle DB

omeuser") # double quotes required, it will ask for the password # Return rows from an SQL query mydata <- sqlQuery (channel, "Select put your query here ...") # same as before odbcClose(channel) # When you're done HTH, Gabriele Franzini ICT Applications Manager Nerv

Re: [R] Building GUI for custom R application

Hello Harsh, I found useful the fgui package ( http://www.people.fas.harvard.edu/~tjhoffm/fgui.html ). Regards, Gabriele Franzini ICT Applications Manager Nerviano Medical Sciences SRL Nerviano Italy -Original Message- From: Barry Rowlingson [mailto:b.rowling...@lancaster.ac.uk

Re: [R] change default output size when using Sweave

Hi, I had a similar problem, and I took the direction of squeezing the output into a minipage, e.g.: ... @ \begin{minipage}[c]{0.6\textwidth} <>= plot(...) abline(...) @ \end{minipage} ... HTH, Gabriele Franzini ICT Applications Manager Nerviano Medical Sciences SRL Nerviano