[R] how to get a row with its its p value below 0.01 ??

2011-09-13 Thread anand m t
Hi all, I'm analyzing micro array data.. it has produced a file (to be specific matrix) withdimension of 35556 2. first few lines of the matrix are as below.. probe_name control.fdr.pvals.present 10338001 0.000440001 10338002 0.000583093 10338003 0.000528449 10338004 0.000610362 10338005 0.000151

[R] how to remove NA/NaN/Inf in a matrix??

2011-09-11 Thread anand m t
Hi all.. I'm very new R, and i'm analyzing microarray data using Bioconductor.. Recently i was given microarray data to analyze. The problem is whenever i run MAS5 presence calls algorithm, it throws an error saying NA/NaN/Inf in foreign function. How do i remove such NA/NaN/Inf's ?? I tried na.om