[R] error: subscript out of bounds?

Hi all, I want to get results for cox proportional hazards on SNP data. I'm trying to get HRs, CI's, & p-values for each individual SNP - this is represented by cov[,i]. When I run my code, I get the following error: subscript out of bounds. I don't know why I am getting this error. I have looked

Re: [R] ERROR: cannot allocate vector of size?

0/5/21 Uwe Ligges > At first, I'd try with an R version from 2010 rather than one from 2007. > Next, I'd try to be sure to really have a 64-bit version of R rather than a > 32 bit one which is what I suspect. > > Best, > Uwe Ligges > > > > On 20.05.2010

[R] ERROR: cannot allocate vector of size?

I've looked through all of the posts about this issue (and there are plenty!) but I am still unable to solve the error. ERROR: cannot allocate vector of size 455 Mb I am using R 2.6.2 - x86_64 on a Linux x86_64 Redhat cluster system. When I log in, based on the specs I provide [qsub -I -X -l arch

[R] GenABEL - problems with load.gwaa.data

Hi all! I am using GenABEL on R for GWAS analysis. I am having a couple of issues: First, I am having a problem reading files (.map, & .ped, size 900Mb, using windows 32-bit) onto R in the "convert.snp.ped" statement. I am thinking this problem is likely due to the large size of the files & my