Re: [R] Print file updated/created date to console?

2011-07-12 Thread Scott Chamberlain
Eik, Thanks very much! Scott On Tuesday, July 12, 2011 at 8:34 AM, Eik Vettorazzi wrote: > Hi, > file.info (http://file.info)() > does that. > > Cheers > > Am 12.07.2011 15:29, schrieb Scott Chamberlain: > > Hello, > > > > Are there any built in or

[R] Print file updated/created date to console?

2011-07-12 Thread Scott Chamberlain
Hello, Are there any built in or user defined functions for printing the date created or date updated for a given file? Ideally a function that works across operating systems. Thanks! Scott Chamberlain [[alternative HTML version deleted

Re: [R] Merging rows in a dataframe

2011-06-16 Thread Scott Chamberlain
Something like this could work for you (note that a few other packages would be faster, such as data.table), but plyr is intuitive. require(plyr) # example data set dat <- data.frame(col1 = rep(c("a","b"), each=5), col2 = rep(c("prog1","prog2","prog3","prog4","prog5"), 2), col3 = rnorm(10), co

Re: [R] Outputting data from TukeyHSD

2011-06-03 Thread Scott Chamberlain
Would this work for you, using the example in the TukeyHSD documentation? summary(fm1 <- aov(breaks ~ wool + tension, data = warpbreaks)) temp <- TukeyHSD(fm1, "tension", ordered = TRUE) write.csv(data.frame(temp$tension), 'tukeyresults.csv') __Scott Chamberlain Rice Universi

Re: [R] where two matrices differ?

2011-05-31 Thread Scott Chamberlain
The following returns zeros where elements do match, and NaN's where they don't match mat1 <- matrix(c(1,2,1,2), 2, 2) mat2 <- matrix(c(0,0,1,2), 2, 2) mat1 %% mat2 __Scott Chamberlain Rice University, EEB Dept. On Tuesday, May 31, 2011 at 8:41 AM, Alaios wrote: > Dear

Re: [R] Print the content of several columns in only one

2011-05-25 Thread Scott Chamberlain
Or use melt in the reshape2 package to melt all columns to one with an indexing column to boot... __Scott Chamberlain Rice University, EEB Dept. On Wednesday, May 25, 2011 at 7:06 AM, zoe.cryocla wrote: > Ok, I found how to do, > with the function paste() > > -- > View th

Re: [R] transpose ?

2011-05-25 Thread Scott Chamberlain
See ?t __Scott Chamberlain Rice University, EEB Dept. On Wednesday, May 25, 2011 at 9:07 AM, Mohamed Lajnef wrote: > Dear All, > Suppose this data.frame > D > > V7 V8 V9 V10 V11 V12 V13 V14 V15 V16 V17 V18 V19 V20 V21 V22 > C C C C T T G G A A C C G G C C > G G T T A A A A T

Re: [R] Reading Data from mle into excel?

2011-05-23 Thread Scott Chamberlain
lts from the lapply call above This will give you a data frame of all the results. Scott Chamberlain Rice University, EEB Dept. On Monday, May 23, 2011 at 4:32 PM, Bazman76 wrote: Hi there, > > I ran the following code: > > vols=read.csv(file="C:/Documents and Settings/H

[R] RCurl postForm problem

2011-05-23 Thread Scott Chamberlain
rches. Is there a connection to the site that needs to be closed or cleared somehow prior to another search to the same site? Scott Chamberlain Rice University, EEB Dept. > sessionInfo() R version 2.13.0 (2011-04-13) Platform: > x86_64-apple-darwin9.8.0/x86_64 (64-bit) locale: [1] C/

Re: [R] Problems with unsplit()

2011-05-19 Thread Scott Chamberlain
You generally aren't allowed to have duplicate row names in a data frame in R. If you want to keep your rownames you can make them a column in the data frame before unsplitting. Scott On Thursday, May 19, 2011 at 5:27 AM, Cecilia Carmo wrote: > Hi everyone, > > > > I have already used split

Re: [R] balanced panel data

2011-05-19 Thread Scott Chamberlain
# If you know how many years are needed you could do this makenewtable <- function(x, years) { xlist <- split(x, x$firm) new <- list() dat <- lapply(xlist, function(z) if(length(unique(z$year)) == years) {new <- z} ) dat_ <- do.call(rbind, dat) return(dat_) } makenewtable(finaldata, 5) Scott On

Re: [R] identical function names from 2 packages

2011-05-18 Thread Scott Chamberlain
Is it not something like? package1::myfunction package2::myfunction On Wednesday, May 18, 2011 at 9:02 PM, Nick Matzke wrote: > Hi, > > If I load 2 packages that have a function with the same > name, how do I tell R to run one or the other? > > (Instead of having R automatically use the first

Re: [R] data network format and grouping analysis

2011-05-18 Thread Scott Chamberlain
The following works to get an igraph object from a matrix edgelist: dat2 <- matrix(rep(seq(1,5,1), 4), nrow=10, ncol=2) graph.edgelist( dat2 ) I tried with NA's but graph.edgelist did not allow NA's. Wouldn't you just leave those rows out with NA's in them? An NA means there is no edge, right?

Re: [R] Change pattern in histograms in ggplot2

2011-05-18 Thread Scott Chamberlain
There are a number of discussion threads on the google groups ggplot2 page: here are two of them. http://groups.google.com/group/ggplot2/browse_thread/thread/ca546f7f4d636deb/e0763a54b7735c35?lnk=gst&q=fill+pattern#e0763a54b7735c35 http://groups.google.com/group/ggplot2/browse_thread/thread/9a9c

Re: [R] Changing order of facet grid in ggplot2

2011-05-18 Thread Scott Chamberlain
data$tp <- factor(data$tp, levels = c("TP-ANY","TP-SUB","TP-CLIN")) qplot(life,geom="bar",weight=sym,ylim=c(0,1),legend=F,data=data) + facet_grid(. ~ tp) On Wednesday, May 18, 2011 at 9:14 AM, Christopher Desjardins wrote: Hi I am running the following code: > > sym <- c(sym1,sym2,sym4) > > life

Re: [R] reshaping issue

2011-05-17 Thread Scott Chamberlain
Can you provide a brief reproducible example for us to play with? Scott On Tuesday, May 17, 2011 at 12:31 PM, Stijn Van Daele wrote: > Dear R users, > > I have a problem with reshaping data. I know such questions have been asked > before, but I can't get it right, neither with the reshape funct

Re: [R] biplots for PCA

2011-05-13 Thread Scott Chamberlain
Have you looked into the options for par?, which it looks like can be included in your call to biplot, perhaps adj or something else to reduce overlap. Scott On Friday, May 13, 2011 at 4:38 AM, Anna Renwick wrote: > Hi all > > I have produced a biplot for a PCA (see attached pdf) that I ran ho

Re: [R] group length

2011-05-12 Thread Scott Chamberlain
require(plyr) laply(list(y1, y2, y3, y4), length) Scott On Thursday, May 12, 2011 at 11:50 AM, Asan Ramzan wrote: Hi > > I have four groups > > y1=c(1.214,1.180,1.199) > y2=c(1.614,1.710,1.867,1.479) > y3=c(1.361,1.270,1.375,1.299) > y4=c(1.459,1.335) > Is there a function that can give me the

Re: [R] ddply with mean and max...

2011-05-11 Thread Scott Chamberlain
That's beyond my knowledge of plyr...S On Wednesday, May 11, 2011 at 12:31 PM, Justin wrote: > Scott Chamberlain gmail.com> writes: > > > > > How about this: > > > > ddply(test.set, .(site), colwise(max)) > > On Wednesday, May 11, 2011 at 11:46 A

Re: [R] ddply with mean and max...

2011-05-11 Thread Scott Chamberlain
How about this: ddply(test.set, .(site), colwise(max)) On Wednesday, May 11, 2011 at 11:46 AM, Justin wrote: > test.set<-data.frame(site=1:10,x=.Random.seed[1:100],y=rnorm(100)) > means<-ddply(test.set,.(site),mean) > means [[alternative HTML version deleted]]

Re: [R] metaMDS and envfit: Help reading output

2011-05-10 Thread Scott Chamberlain
Here is a thread I found on this issue:http://www.mail-archive.com/r-sig-ecology@r-project.org/msg00755.html It's not a simple correlation apparently, but I can't figure out how they get the output from envfit using lm(Y ~ scores1 + scores2). You can plot the data like: library(MASS); require(

Re: [R] ggplot2 and add circle

2011-05-10 Thread Scott Chamberlain
100) > plot_shad_f(f) > > > I would like to add a circle at the middle of this region with a range of 10. > > Best Regards > > Alex > > --- On Tue, 5/10/11, Scott Chamberlain wrote: > > > > From: Scott Chamberlain > > Subject: Re: [R] ggplot2 and ad

Re: [R] ggplot2 and add circle

2011-05-10 Thread Scott Chamberlain
You should provide reproducible data in addition to your code. S On Tuesday, May 10, 2011 at 11:54 AM, Alaios wrote: > Dear all, > today I have writted the following code, > to plot the contents of some matrices I have > > plot_shad_f > function(f){ > library(ggplot2) > dev.new() > plotdata<

Re: [R] new to loops

2011-05-08 Thread Scott Chamberlain
Not knowing what format your data is in or what model you are using... df # is your data frame with columns the variables you are running regressions for datout <- data.frame(coeff = NA, conf_low = NA, conf_high = NA, odd = NA) # a table to put your results in for(i in 1:length(names(df)[2:10]))

Re: [R] functions pandit and treebase in the package apTreeshape

2011-05-06 Thread Scott Chamberlain
I think those functions are now defunct (were only available in previous versions). S On Thursday, May 5, 2011 at 6:33 PM, Andrew Robinson wrote: > Hi Arnau, > > please send the output of sessionInfo() and the exact commands and > response that you used to install and load apTreeshape. > > Ch

Re: [R] merging multiple columns from two dataframes

2011-05-04 Thread Scott Chamberlain
merge(dat, pheno, by.x = "sid", by.y = "sen") Scott On Wednesday, May 4, 2011 at 12:53 PM, 1Rnwb wrote: > Hello, > > I have data in a dataframe with 139104 rows which is multiple of 96x1449. i > have a phenotype file which contains the phenotype information for the 96 > samples. the snp name i

Re: [R] combine lattice plot and standard R plot

2011-05-04 Thread Scott Chamberlain
What about the example in gridExtra package: require(ggplot2); require(lattice); require(gridExtra) grid.arrange(qplot(1:10), xyplot(1:10~1:10), tableGrob(head(iris)), nrow=2, as.table=TRUE, main="test main", sub=textGrob("test sub", gp=gpar(font=2))) On Wednesday, May 4, 2011 at 1:44 PM, Jonatha

Re: [R] select value from a column depending on a value in another column

2011-05-04 Thread Scott Chamberlain
This for example could work df <- data.frame(x = seq(1:10), y = rep(c("a","b"),5)) df df$x[df$y %in% "a"] Scott On Wednesday, May 4, 2011 at 4:01 AM, tornanddesperate wrote: > Hi everybody > > I couldn't find the solution to what must be quite a simple problem. Maybe > you can help? > > tre

Re: [R] Merging two columns of a data frame

2011-04-28 Thread Scott Chamberlain
what about something like: dat <- data.frame(var1 = c("a","b"), var2 = c("c","d")) dat$var3 <- sapply(dat, function(x) paste(dat$var1,dat$var2,sep=""))[,1] Scott On Thursday, April 28, 2011 at 10:22 AM, Abraham Mathew wrote: I've kind of solved the issue. > > dat$Time <- paste(dat[,2], dat[,1]

Re: [R] calculations with vectors of unequal length

2011-04-27 Thread Scott Chamberlain
> df.1 <- merge(df.1, df.2, by = "year") > df.1$sum <- df.1$number.x + > df.1$number.y > df.1 year level number.x number.y sum 1 1 a 11 21 32 2 1 a 17 21 38 3 1 a 14 > 21 35 4 2 b 12 22 34 5 2 b 15 22 37 6 2 b 18 22 40 7 3 c 16 23 39 8 3 c 13 23 > 36 9 3 c 19 23 42 Scott On Wednesday, April

Re: [R] Geographic distance between lat-long points in R?

2011-04-18 Thread Scott Chamberlain
Hi Curt, Thanks for the help. According to that blogpost you sent, I am using the function gcd.hf using the Haversine formula. I wrapped it up in a function called CalcDists so that I can get a distance matrix between N sites. I don't know much about calculating distances, so does this seem

Re: [R] Geographic distance between lat-long points in R?

2011-04-11 Thread Scott Chamberlain
Thanks very much for the help! Scott On Monday, April 11, 2011 at 12:54 PM, seeliger.c...@epamail.epa.gov wrote: > I have a bunch of geographic locations specified by lat-long > > coordinates. What's an easy way to calculate geographic distance > > between any two points? OR, perhaps there is

Re: [R] Meta-analysis of a correlation matrix

2011-04-11 Thread Scott Chamberlain
I don't know if it can, but have you looked into the metafor package? On Monday, April 11, 2011 at 1:46 PM, Iuri Gavronski wrote: > Sorry for the cross-posting, but I would like to know if anyone is > aware of a package in R for this. > > > > -- Forwarded message -- > From: John

[R] Geographic distance between lat-long points in R?

2011-04-11 Thread Scott Chamberlain
Dear R, I have a bunch of geographic locations specified by lat-long coordinates. What's an easy way to calculate geographic distance between any two points? OR, perhaps there is a function for calculating a distance matrix for K sites? Sincerely, Scott Chambe

Re: [R] metaplot

2011-04-06 Thread Scott Chamberlain
What about the metafor package? Or just create your own plot. For example, using ggplot2 package: limits <- aes(ymax = OR + (OR - 95%LCI), ymin = OR - (OR - 95%LCI)) ggplot(dataframe, aes(x = Study.Name, y = OR)) + geom_point() + geom_errobar(limits) Best, Scott On Wednesday, April 6, 2011

Re: [R] appending collums in for loop

2011-03-21 Thread Scott Chamberlain
I can't reproduce your work, but I think you just need > regionMatchABCDE[,i] <- cbind(regionMatch[,10:18]) instead of regionMatchABCDE <- cbind(regionMatch[,10:18]) within the for loop Scott On Monday, March 21, 2011 at 7:36 AM, Who Am I? wrote: Hoi All, > > I am trying to append collums

Re: [R] Beginner question: How to replace part of a filename in read.csv?

2011-03-17 Thread Scott Chamberlain
> paste(samp, ".pdf", sep="") [1] "20110317.pdf" > paste(samp, ".csv", sep="") [1] "20110317.csv" On Thursday, March 17, 2011 at 10:05 AM, pierz wrote: I would like to use samp as a part of a filename that I can change. My source > files are .csv files with date as the file name, and I would like t

Re: [R] Reorganize data frame

2011-03-16 Thread Scott Chamberlain
require(reshape2) dcast(stock.returns, Date ~ Ticker) The numbers were changed from their original values, but if you originally created the values Return as.numeric they should stay the same On Wednesday, March 16, 2011 at 9:37 AM, chris99 wrote: Hi group, > > I am trying to convert the organi

Re: [R] making dataframes

2011-03-16 Thread Scott Chamberlain
require(reshape2) melt(dum, id = 1) On Wednesday, March 16, 2011 at 9:28 AM, pelt wrote: Dear all, > > I have a dataframe which looks like this (dummy): > > date<-c("jan", "feb", "mar", "apr", "may", "june", "july", > "aug","sep","oct","nov","dec") > col1<-c(8.2,5.4,4.3,4.1,3.1,2.5,1.1,4.5,3.2,1

Re: [R] run a slef-written function

2011-03-15 Thread Scott Chamberlain
you could run source(directory/textfilename.txt) [and then you can use it in R] or paste the function into the console, or highlight and pass the function from the built in R text editor, or highlight and pass the function from your external text editor (notepad++, emacs, textwrangler, etc.)

Re: [R] problem with looping formula through table

2011-03-14 Thread Scott Chamberlain
library(tseries) sie <- get.hist.quote(instrument="SIE.DE", start="2010-01-01", quote="AdjClose") vow <- get.hist.quote(instrument="VOW.DE", start="2010-01-01", quote="AdjClose") lin <- get.hist.quote(instrument="LIN.DE", start="2010-01-01", quote="AdjClose") dax <- get.hist.quote(instrument="^GDA

Re: [R] plotCI() with ggplot2

2011-03-08 Thread Scott Chamberlain
The code to use would be something like limits <- aes(ymax = y + se, ymin = y - se) # set error bar dimensions ggplot(yourdataframe, aes(x = x, y = y, colour = z)) + geom_point() + geom_errorbar(limits) On Tuesday, March 8, 2011 at 9:34 AM, Sascha Vieweg wrote: > Hello > > Currently, I plot

Re: [R] help needed with histogram plotting

2011-03-06 Thread Scott Chamberlain
Does this seems like a good stand in for now: require(ggplot2) x <- runif(100,1,2) y <- runif(100,50,60) z <- runif(100,99,100) xyz <- melt(data.frame(x,y,z)) ggplot(xyz, aes(value)) + geom_histogram() + facet_grid(~ variable, scale="free") On Sunday, March 6, 2011 at 9:25 PM, cassie jones wr

Re: [R] How to load load multiple text files and order by id

2011-03-05 Thread Scott Chamberlain
Hi Richard, This may be a bit ugly, but it should work if you have all your files in a folder you are calling from. Use dir() within the lapply call in combination with read.table as the function require(plyr) setwd("/Mac/R_stuff/files") # where your files are in this directory, and no files y

Re: [R] Plotting Mean in plotting degree distribution

2011-03-03 Thread Scott Chamberlain
library(igraph) G <- erdos.renyi.game(1000, 1/1000) # a random graph dd1 = degree.distribution(G) plot(dd1, xlab = "degree", ylab="frequency") abline(h = mean(dd1)) # the mean would be a horizontal line On Thursday, March 3, 2011 at 4:43 PM, kparamas wrote: > Hi, > > I am plotting degree dis

Re: [R] Ordering several histograms

2011-03-03 Thread Scott Chamberlain
You could get close with the ggplot2 package using the function facet_grid or facet_wrap, but each histogram would be on a separate x-axis Scott On Thursday, March 3, 2011 at 8:00 AM, djbirdnerd wrote: > Hallo everyone, > > I want to evaluate the change of the distribution for several size clas

Re: [R] What am I doing wrong with this loop ?

2011-03-03 Thread Scott Chamberlain
The "y" object within the loop returns a list and you are trying to put the first row of the 2nd column of the list (which refers to a vector of length 1 to i) into the object z, which is vector. I am not sure at all what you are trying to end up with. Scott On Wednesday, March 2, 2011 at 9:19

Re: [R] transform table to matrix

2011-03-02 Thread Scott Chamberlain
Agreed Peter: weird. What is the purpose of your inquiry SK? And why is your inquiry so similar to the one at the hyperlink I provided? Scott On Wednesday, March 2, 2011 at 6:10 PM, P Ehlers wrote: > Scott Chamberlain wrote: > > This thread seems freakishly similar to what you a

Re: [R] transform table to matrix

2011-03-02 Thread Scott Chamberlain
This thread seems freakishly similar to what you are askingScott http://tolstoy.newcastle.edu.au/R/help/06/07/30127.html On Wednesday, March 2, 2011 at 7:43 AM, SK MAIDUL HAQUE wrote: > I have a text file that I have imported into R. It contains 3 columns and > 316940 rows. The first column

Re: [R] Rcommander

2011-03-02 Thread Scott Chamberlain
install.packages("Rcmdr", dependencies=TRUE) library(Rcmdr) Scott On Wednesday, March 2, 2011 at 2:41 AM, Selda Korkmaz wrote: > Dear Sirs, > > i just downloaded the R programm on my Macbook, but I can´t open Rcmdr, > although I installed the needed Rcmdr-packages. I would be very happy, if y

Re: [R] how to simplify a data.frame and add the counts of duplicate rows as a new column

2011-03-02 Thread Scott Chamberlain
see package plyr, especially the function ddply(), eg.., in your case: ddply(dataframe, .(columnA, columnB), summarise, columnC = length(columnB) ) Scott On Wednesday, March 2, 2011 at 9:10 AM, Simone Gabbriellini wrote: > Hello List, > > I would like to simplify a data.frame like this > > co

Re: [R] Is there any Command showing correlation of all variables in a dataset?

2011-03-01 Thread Scott Chamberlain
cor.prob function gives matrix of correlation coefficients and p-values together ### Function for calculating correlation matrix, corrs below diagonal, ### and P-values above diagonal cor.prob <- function(X, dfr = nrow(X) - 2) { R <- cor(X) above <- row(R) < col(R) r2 <- R[above]^2 Fsta

Re: [R] Components of variance with lme

2011-03-01 Thread Scott Chamberlain
VarCorr() and then calculate percentage variance for each component from output of VarCorr On Tuesday, March 1, 2011 at 6:55 AM, John Sorkin wrote: > R 2.10 > Windows Vista > > Is it possible to run a variance-components analysis using lme? I looked at > Pinheiro and Bates' book and don't see c

Re: [R] means, SD's and tapply

2011-02-25 Thread Scott Chamberlain
chris, it seems like you need the plyr package, esp ddply. for example: stems353 <- data.frame(Time = rep(c("Modern", "Old"), 4), SizeClass = rep(c("class1","class2"), each = 4), Species = rep(c("a","b"), each = 4), Stems = seq(1,8,1)) ddply(stems353, .(Species, SizeClass, Time), summarise, mea

Re: [R] Error

2011-02-25 Thread Scott Chamberlain
Works fine on my machine: > DF A B C D E 1 1 a 1999 0 0 2 1 b 1999 0 0 3 1 c 1999 0 0 4 1 d 1999 0 0 5 2 c 2001 0 1 6 2 d 2001 1 0 7 3 a 2004 1 0 8 3 b 2004 0 1 9 3 d 2004 1 1 10 4 b 2001 0 2 11 4 c 2001 1 1 12 4 d 2001 1 2 here's my session info: > sessionInfo() R version 2.12.1 (2010-12-16)

Re: [R] Group rows by common ID and plot?

2011-02-25 Thread Scott Chamberlain
I imagine you want the ggplot2 package. something like: ggplot(dataframe, aes(x = yourxvar, y = youryvar)) + geom_point() + facet_wrap(~ ProbeSet.ID) Or facet_grid(), either of which makes a different panel for each unique level of ProbeSet.ID see gggplot help here: http://had.co.nz/ggplot2/

Re: [R] copy values from one dataframes into another

2011-02-23 Thread Scott Chamberlain
Hi Sandra, Terribly ugly, but this way at least you don't have to know which years are missing, etc.: dat <- data.frame(year = c(1981,1984,1985,1986), size = c(1,2,3,4)) year_ <- data.frame(year = seq(1981,1986,1)) year_dat <- merge(year_, dat, by = "year", all=T) na_s <- subset(year_dat, is.n

Re: [R] Using string to call/manipulate an object

2011-02-23 Thread Scott Chamberlain
this works: colnames(IBM) <- c("open","high","low","close","vol") scott On Wednesday, February 23, 2011 at 7:55 AM, Kushan Thakkar wrote: > colnames(my.ticker) <- c("open","high","low","close","vol") [[alternative HTML version deleted]] __ R

Re: [R] Species accumulation curves with differential sampling effort

2011-02-22 Thread Scott Chamberlain
Dear Jari, For what it's worth, I could see the need in my own work for species accumulation curves with variable sampling effort. Scott Chamberlain On Tuesday, February 22, 2011 at 2:26 AM, Jari Oksanen wrote: Vanessa Francisco gmail.com> writes: > > > > > Hello! I&

[R] ParallelR Lite on Mac OSX?

2011-02-16 Thread Scott Chamberlain
Dear R users, I tried to use the built in parallelization in RevolutionR 2.10.0 on my Mac OSX, with i5 processor (so 4 cores). Nothing happens when I use %dopar% for parallelization in RevolutionR 2.10.0, and using 2.12.1 I just get errors: library(doMC) registerDoMC() getDoParWorkers() x <-

[R] txtProgressBar examples?

2011-02-14 Thread Scott Chamberlain
Dear R users, I am curious if someone could direct me towards websites/tutorials for uses of progress bars (especially) in R. I can't seem to figure them out. Thanks very much, Scott [[alternative HTML version deleted]] __ R-help@r-projec

[R] Potential biparite problem?

2011-01-06 Thread Scott Chamberlain
5 [5,] 0 1 1 0 1 [6,] 1 0 2 3 1 [7,] 1 1 0 1 2 [8,] 0 1 0 4 1 [9,] 0 0 1 0 0 [10,] 1 3 0 2 3 Sincerely, Scott Chamberlain Rice University, EEB Dept. [[alternative HTML

[R] Selecting non-empty elements after strsplit of string

2010-12-14 Thread Scott Chamberlain
nstead all elements that are not missing. That is, do not select any elements that are simply "". output <- c("a b 6") gsub(" ","",unlist(strsplit(output," ",fixed=TRUE))) [1] "a""" "b"&q

[R] Selecting non-empty elements after strsplit of string

2010-12-14 Thread Scott Chamberlain
ct instead all elements that are not missing. That is, do not select any elements that are simply "". output <- c("a b 6") gsub(" ","",unlist(strsplit(output," ",fixed=TRUE))) [1] "a""" "b"

[R] Textwrangler Languages Folder

2010-12-10 Thread Scott Chamberlain
Dear R Community, I recently switched to a Mac (10.6.5), and have installed Textwrangler to run code to R. However, I can't install the syntax highlighting file because I can't find the directory: "~Users/username/Library/Application Support/TextWrangler/Language Modules/". Is there a different lo

[R] metafor: including phylogenetic non-independence among species?

2010-11-11 Thread Scott Chamberlain
R in any fashion? Thanks, Scott Chamberlain [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and

[R] ggplot2: facet_grid with different vertical lines on each facet

2010-11-09 Thread Scott Chamberlain
)) + geom_histogram() + facet_grid(.~variable) + geom_vline(xintercept=c(5,10,15)) How can I add a vertical line at different x positions on each facet? Thanks very much, Scott Chamberlain [[alternative HTML version deleted]] __ R-help@r-project.org

Re: [R] Ignoring missing elements in data.frame()

2010-06-07 Thread Scott Chamberlain
te(Names,collapse=",") > expr = paste("output <- data.frame(",Names,")",sep="") > eval(parse(text=expr)) > > Both are not really the most optimal solution, but do work. It would > be better if you made a list or matrix beforehand and then sav

[R] Ignoring missing elements in data.frame()

2010-06-04 Thread Scott Chamberlain
t(p2s),t(p3s),t(p9s))) Error in t(p9s) : object 'p9s' not found Thanks, Scott Chamberlain Rice University Houston, TX __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www