Re: [R] Bootstrap confidence intervals using bootcov from the rms package

2010-11-10 Thread Kim Fernandes
Hi Frank, Good to know. Thanks again for your help! Kim On Wed, Nov 10, 2010 at 8:53 AM, Frank Harrell wrote: > > Unfortunately, bootcov is not meant to operate on fit objects produced by > fit.mult.impute. bootcov "gets there too late" in the process and does not > know how to penalize for i

[R] Bootstrap confidence intervals using bootcov from the rms package

2010-11-09 Thread Kim Fernandes
Hello, I am using R.12.2.0. I am trying to generate bootstrap confidence intervals using bootcov from the rms package. I am able to impute the missing data using aregImpute and to perform a linear regression on the imputed datasets using fit.mult.impute, but I am unable to use bootcov to generat

Re: [R] Error message in fit.mult.impute (Hmisc package)

2010-11-02 Thread Kim Fernandes
Thank you! That has fixed the problem. Kim On Tue, Nov 2, 2010 at 7:42 AM, Frank Harrell wrote: > > I tried your code with the rms package (replacement for the Design package; > see http://biostat.mc.vanderbilt.edu/Rrms) and it worked fine. > > Note that multiple imputation needs the outcome var

[R] Error message in fit.mult.impute (Hmisc package)

2010-11-01 Thread Kim Fernandes
Hello, I would like to use the aregImpute and fit.mult.impute to impute missing values for my dataset and then conduct logistic regression analyses on the data, taking into account that we imputed values. I have no problems imputing the values using aregImpute, but I am getting an error at the fi

[R] val.prob in the Design package - Calibrated Brier Score

2010-08-13 Thread Kim Fernandes
Hello, I am using the val.prob function in the Design package. I understand how the Brier quadratic error score is calculated, but I do not know how the Brier score computed on the calibrated rather than raw predicted probabilities (B cal) is calculated. My question is: how are the calibrated pr