[R] producing histogram-like plot

which plot type to use. Thanks in advance! Karin -- Karin Lagesen, Ph.D. Centre for Ecological and Evolutionary Synthesis (CEES) University of Oslo, Dept. of Biology P.O. Box 1066 Blindern 0316 Oslo, Norway Ph. +47 22844132 Fax. +47 22854001 Email karin.lage...@bio.uio.no http://folk.uio.no

[R] plotting histograms/density plots in a triangular layout?

where the Xes represent where I want plots, and the 1,2,3 represent the legends. I have seen similar plots done by R, so I know it is possible, but the question is how :D TIA, Karin -- Karin Lagesen, Ph.D. Centre for Ecological and Evolutionary Synthesis (CEES) University of Oslo, Dept. of

[R] transparent concentric circles

circle (which would be the one containing the number of characteristics shared by all four). Can somebody point me to what I can use to do this? Thanks! Karin -- Karin Lagesen, PhD __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman

Re: [R] performing function on data frame

ment. I.e: I want to create a new data frame from the old data frame, where each element in the new data frame is newDF[i,j] = oldDF[i,j] - mean(d[,j]) / sddev(d[,j]) I could, I think, iterate like this over the data frame, but I keep thinking that one of the apply functions should be employed

[R] performing function on data frame

- mean(column y)/stddev(column y)). Thanks! -- Karin Lagesen, Ph.D. karin.lage...@medisin.uio.no http://folk.uio.no/karinlag __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-proj

[R] xyplot key issue - line colors

n something about superposing lines on top of this somehow, but I couldn't figure out how to do it. Thanks! Karin -- Karin Lagesen, PhD student [EMAIL PROTECTED] http://folk.uio.no/karinlag __ R-help@r-project.org mailing list https://stat.ethz.ch/m

[R] conversion of data for use within barchart

, so I hope somebody understands what I want! Thanks! Karin -- Karin Lagesen, PhD student [EMAIL PROTECTED] http://folk.uio.no/karinlag __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http

[R] xyplot and separate abline per plot

alues I want plotted in each plot. I hope I am able to convey what I want:) Thanks in advance, karin -- Karin Lagesen, PhD student [EMAIL PROTECTED] http://folk.uio.no/karinlag __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/

Re: [R] xyplot questions - axis and plotting two things in same panel

-Original Message- >> From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On >> Behalf Of Karin Lagesen >> Sent: Wednesday, June 25, 2008 2:13 AM >> To: r-help@r-project.org >> Subject: [R] xyplot questions - axis and plotting two things in same panel > &g

[R] xyplot questions - axis and plotting two things in same panel

my data set that really breaks everything. Thanks for your help! Karin -- Karin Lagesen, PhD student [EMAIL PROTECTED] http://folk.uio.no/karinlag __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the po

[R] using the stepfun to plot histogram outline.

that the data I have is on the same format as testdata above is. Thanks for your help! Karin -- Karin Lagesen, PhD student [EMAIL PROTECTED] http://folk.uio.no/karinlag __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r

[R] vector comparison

I know this is fairly basic, but I must have somehow missed it in the manuals. I have two vectors, often of unequal length. I would like to compare them for identity. Order of elements do not matter, but they should contain the same. I.e: I want this kind of comparison: > if (1==1) show("yes")

[R] figuring out the results from hclust

would however like to not examine all of the data I have by hand:) Could any of you point me to what I need to do to get at this data? I have tried to examine the merge data in both cases, but I am coming up short. Thanks! Karin -- Karin Lagesen, PhD student [EMAIL PROTECTED] http://fo

[R] deconvoluting hclust objects

t at the sizes of the subtrees. I know I can use cutree to get at the cut, but I cannot see anything systematic in which group becomes group no 1 and so forth. The results I want would in this example be: 236 8.5771948 1.7894737 Any hints for me? Thanks! Karin -- Karin Lagesen, P

[R] problems with data frames, factors and lists

factor level, NAs generated Now, this is a pain in the neck. How can I merge these lists to the data frame and still have the value $twogrp as a factor? Thanks, and I hope my code makes some sense! Karin -- Karin Lagesen, PhD student [EMAIL PROTECTED] http://folk.uio.no/karinlag _

[R] cloud plot has white(transparent?) background

nd that makes things easier to see. Mine comes out with a white, potentially transparent background and also the point colors have changed. How do I get the nice gray color back? Thanks! Karin -- Karin Lagesen, PhD student [EMAIL PROTECTED] http://

[R] adding bwplot to existing bwplot

bwplot(no_clust~type|phylum, data = operonthings) and bwplot(no_seqs~type|phylum, data = operonthings) Any thoughts on how to do this? Thanks! Karin -- Karin Lagesen, PhD student [EMAIL PROTECTED] http://folk.uio.no/karinlag __ R-help@r-project.org mailin

[R] hclust graphics - plotting many points

ing like I get in the x11() window which I can also store and potentially show other people. Thanks! Karin -- Karin Lagesen, PhD student [EMAIL PROTECTED] http://folk.uio.no/karinlag __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listi

[R] combine vector and data frame on field?

Count corresponds to the field called PID in the data frame. Any hints on how to do this? cbind just adds the vector onto the end, and I couldn't quite figure out if I could somehow say that the level should correspond to the PID. Thanks a lot for your helpin advance:) Karin -- Karin Lages

[R] clustering problem

your help! Karin -- Karin Lagesen, PhD student [EMAIL PROTECTED] http://folk.uio.no/karinlag __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.htm

[R] tabulation on dataframe question

). In this case, if the requirement was Distances == 0.2 AlphaBeta Alpha 12 Beta20 This resulting table would be symmetrical. I hope I am able to convey what I would like, and TIA for your help! Karin -- Karin Lagesen, PhD student [EMAIL PROTECTED] http

[R] extracting rows from dataframe that match a vector

that I have misunderstood? Thanks for your help btw! Karin -- Karin Lagesen, PhD student [EMAIL PROTECTED] http://folk.uio.no/karinlag __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide

[R] accessing the indices of outliers in a data frame boxplot

hiskers and use that as a criteria, but I am unsertain of how to do this withhout doing it manually. The factor I am plotting against contains 17 levels, and I'd thus like to see if there is a somewhat more general solution available. Thanks for your help! Karin -- Karin Lagesen, PhD student [E

[R] contingency table on data frame

# Perhaps has these ys: 2,4,2 My dataframe has lots of other colums too, but I only want this information out. Thankyou for your help! Karin -- Karin Lagesen, PhD student [EMAIL PROTECTED] http://folk.uio.no/karinlag __ R-help@r-project.org mailing

[R] subsetting a data frame using string matching

5 Alpha5 6 beta6 > I would like to be able to get a new data frame from this data frame containing only rows that match a certain string. In this case it could for instance be the string "eta". I have tried various ways of using agrep and grep, but so far I have not found

[R] creating summary functions for data frame

in the mail archives...:) TIA, Karin -- Karin Lagesen, PhD student [EMAIL PROTECTED] http://folk.uio.no/karinlag __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.

[R] "continuous" boxplot?

Karin -- Karin Lagesen, PhD student [EMAIL PROTECTED] http://folk.uio.no/karinlag __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide comm

[R] How to choose name for package during install (was:Re: problem loading hexbin associated package colorspace)

urce = keep.source) : in 'colorspace' methods for export not found: [, coords, plot Error: package/namespace load failed for 'colorspace' > Karin -- Karin Lagesen, PhD student [EMAIL PROTECTED] http://folk.uio.no/karinlag _

[R] problem loading hexbin associated package colorspace

s" "grDevices" "utils" "datasets" [7] "methods" "base" other attached packages: lattice "0.14-9" > The colorspace package is version 0.95. Is this an error with my system, this code

[R] Am I misunderstanding the ifelse construction?

gc_contents become negative. An I misunderstanding how to use the ifelse construct? And in that case, how should I go about doing this in a different way? Thankyou very much in advance for your help, and I hope that my question is not too banal! Karin -- Karin Lagesen, PhD student [EMAIL PROT

[R] function on factors - how best to proceed

nction? Or is my solution way off from how things are done in R? Thankyou very much for your help! Karin -- Karin Lagesen, PhD student [EMAIL PROTECTED] http://folk.uio.no/karinlag __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r

[R] add group to boxplot

t;A") > Aspray[] = lapply(Aspray, function(x) if (is.factor(x)) factor(x) else x) Now, I want to add Aspray as a new boxplot at the end of the existing plot, What do I do then? Karin -- Karin Lagesen, PhD student [EMAIL PROTECTED] http://folk.uio.no/karinlag _