e my blog post 'Please Avoid detectCores() in
your R Packages' (https://www.jottr.org/2022/12/05/avoid-detectcores/)
from 2022-12-05 for even more reasons.
/Henrik
On Sun, Jul 2, 2023 at 9:55 AM Ravi Varadhan via R-help
wrote:
>
> This is the specific error messsage from R CMD che
e how the latter two assigned a <- 2 to the global environment.
/Henrik
On Thu, May 18, 2023 at 8:22 AM Berwin A Turlach
wrote:
>
> G'day Federico,
>
> On Wed, 17 May 2023 10:42:17 +
> "Calboli Federico (LUKE)" wrote:
>
> > sexsnp = rep(NA, 1750)
&g
d port4me, see the vignette
<https://cran.r-project.org/web/packages/port4me/vignettes/port4me-overview.html>.
/Henrik
On Tue, Dec 6, 2022 at 11:00 AM akshay kulkarni wrote:
>
> Dear Henrik
> It is workingthanks a lot! I had actually
> previously t
m the author)
A cross-platform alternative to netstat::free_port(), is
port4me::port4me(), which is also available from CRAN
(https://cran.r-project.org/package=port4me). It requires no external
tools, but R (>= 4.0.0).
/Henrik
On Tue, Dec 6, 2022 at 10:41 AM akshay kulkarni wrote:
>
> Dear Henr
What's the error?!?
/Henrik
On Tue, Dec 6, 2022 at 10:19 AM akshay kulkarni wrote:
>
> dear members,
>
> I am using free_port() in netstat package in R. It is working in windows but
> not in linux. It is throwing an error in linux. ANy help please?
>
> THanking you,
You need to pass character.only = TRUE to require() whenever you
specify the package using a character variable.
I agree, the error message is confusing.
/Henrik
On Mon, Oct 24, 2022 at 9:26 AM Kelly Thompson wrote:
>
> # Below, when using require(), why do I get the error message "
ron")
[1] "C:\\Users\\alice\\Documents\\.Renviron"
For example,
> cat(file = "~/.Renviron", append = TRUE,
> "HTTP_PROXY=http://proxy-host:3128/";, "HTTPS_PROXY=https://proxy-host:3128/";,
> "HTTPS_PROXY_USER=dummy", sep = "\n")
At l
compatible with multi-threaded code used by some packages. This
is a problem independent of futures per se.
Hope this helps
Henrik
On Fri, Apr 8, 2022 at 2:19 PM Ivan Krylov wrote:
>
> On Fri, 8 Apr 2022 22:02:25 +0200
> Guido Kraemer via R-help wrote:
>
> > > cl <-
ov/development/checkpoint-restart/dmtcp/
* http://wiki.orc.gmu.edu/mkdocs/Creating_Checkpoints_%28DMTCP%29/
* https://wiki.york.ac.uk/display/RCS/VK21%29+Checkpointing+with+DMTCP
That's all I have time for now,
Henrik
>
> -Andy
>
> On 12/13/21 11:51 AM, Duncan Murdoch wrote:
> >
BSan). Those have helped me in the past
to track down mistakes, and even spot things I was not aware of. And
it's an ease of mind as a developer when these tools and Valgrind
checks give all OK reports.
The R-hub services is cross-platform and requires no local setup.
/Henrik
On Fri, Oct 2
))
[1] 8000203
# A better size estimate
> lobstr::obj_size(formula)
8,000,888 B
/Henrik
On Wed, Oct 20, 2021 at 12:57 PM Duncan Murdoch
wrote:
>
> On 20/10/2021 9:20 a.m., Jinsong Zhao wrote:
> > On 2021/10/20 21:05, Duncan Murdoch wrote:
> >> On 20/10/2021 8:57 a.m., J
install.packages("forensim")
Installing package into
‘/c4/home/henrik/R/x86_64-pc-linux-gnu-library/4.1-CBI-gcc8’
(as ‘lib’ is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/forensim_4.3.tar.gz'
Content type 'appl
You need to use %dorng% from the doRNG package instead of %dopar% when
parallelizing with foreach::foreach() to get reproducible random
numbers. See also
https://www.jottr.org/2020/09/22/push-for-statical-sound-rng/.
/Henrik
On Thu, Aug 19, 2021 at 1:38 PM Eric Berger wrote:
>
> In tha
f any of 2-4 gives a different result, that's a first clue.
/Henrik
On Wed, Apr 7, 2021 at 1:17 AM Ashim Kapoor wrote:
>
> On Wed, Apr 7, 2021 at 12:51 PM Martin Maechler
> wrote:
> >
> > >>>>> Ashim Kapoor
> > >>>>>
Test with:
clusterCall(cl, function() { suppressWarnings(source("xx.R")) })
If the warnings disappear, then the warnings are produced on the
workers from source():ing the file.
/Henrik
On Thu, Mar 4, 2021 at 10:20 AM Bill Dunlap wrote:
>
> The warnings come from the garbage
ing
source("xx.R") sequentially in a for() loop or an lapply() call.
Hope this helps,
Henrik
On Thu, Mar 4, 2021 at 9:58 AM Bill Dunlap wrote:
>
> To avoid the warnings from gc(), call parallel::stopCluster(cl) before
> removing or overwriting cl.
>
> -Bill
>
>
uot;. I think this might be where the confusion is, it may mean
> the remote machine does not have a public IP, but the server machine does.
> I'm in the opposite situation, the server does not have a public IP, but the
> remote does. I'm not sure if this package can handle my cas
ect.org/package=parallelly.
/Henrik
On Mon, Jan 18, 2021 at 6:45 AM Jiefei Wang wrote:
>
> Hi all,
>
> I have a few cloud instances and I want to use them to do parallel
> computing. I would like to create a socket cluster on my local machine to
> control the remote instances. Here i
quot;base" "lattice"
>
>
Also, if you have saved S4 objects (e.g. x <- Matrix::Matrix(0, 3,
2)), they will trigger their corresponding packages to be loaded when
"used" (e.g. print():ed) but not before.
Not saying it explains all of OPs packages - just wanted to sa
an start R at the terminal with 'R
--vanilla'.
/Henrik
On Thu, Oct 22, 2020 at 4:14 PM Jeff Newmiller wrote:
>
> Have you looked into your .Rprofile file? Loading packages is not something R
> normally does without your telling it to do so, but many people forget that
> they
hat is,
the .Renviron file that is located in the same folder as the .RData
file. It will never load ~/.Renviron (e.g.
C:/Users\alice/Documents/.Renviron) unless the .RData file is in that
folder too.
This looks odd to me but it could be that I made another mistake in my
conclusions above. I let someon
Does serialize(..., version = 2L) do what you want?
/Henrik
On Sat, Aug 29, 2020 at 10:10 AM Sigbert Klinke
wrote:
>
> Hi,
>
> is there in R a way to "normalize" a vector from
> compact_intseq/compact_realseq to a "normal" vector?
>
> Sigbert
>
&
le directory is used: if none
succeeds ‘/tmp’ is used. The path should not contain spaces. **Note
that setting any of these environment variables in the R session has
no effect on tempdir(): the per-session temporary directory is created
before the interpreter is started.**
/Henrik
On Sat, Aug
A version of Eric's answer is to use grepl(), which returns a logical vector:
mydata[grepl("ConfoMap", mydata) & grepl("GuineaPigs", mydata)]
with the OR analogue:
mydata[grepl("ConfoMap", mydata) | grepl("GuineaPigs", mydata)]
/Henrik
On
FWIW, see also the 'midi' R package
(https://github.com/moodymudskipper/midi). It's not on CRAN. /Henrik
On Thu, Jul 23, 2020 at 12:19 PM Rasmus Liland wrote:
>
> On 2020-07-23 14:19 -0400, Richard M. Heiberger wrote:
> > On Thu, Jul 23, 2020 at 7:21 AM bretschr wr
> larger than 125.
Depending on the system, you might be able to increase this by
rebuilding R from source after editing a hard-coded constant. I've
verified that this worked on a local Ubuntu 16.04 system. See
https://github.com/HenrikBengtsson/Wishlist-for-R/issues/28 for
details about this
Careful so you don't overwrite an existing ~/.Renviron file; it's safer to
use something like:
cat('PATH="${RTOOLS40_HOME}\\usr\\bin;${PATH}"\n', file="~/.Renviron"
append=TRUE)
/Henrik
On Wed, Apr 29, 2020, 15:33 Fox, John wrote:
> Dear Steve
no indications that
this person has even attempted to solve the "problems" themselves. This
smells bad intent to me.
/Henrik
On Mon, Dec 16, 2019, 07:40 Александр Дубровский
wrote:
> mrg <- function(A,B){
> R <- c()
> while(length(A)>0 length(B)>0){
&
quot;gene","alpha","SE","P","Nsnps","Ngene")
file<-paste(gene,"matrix",sep=".")
if (!file.exists(file)) stop("File not found: ", file)
filecluster<-read.table(file,header=T,sep=" ",dec=".&qu
Maybe it would help to add:
file<-paste(gene,"matrix",sep=".")
if (!file.exists(file)) stop("File not found: ", file)
filecluster<-read.table(file,header=T,sep=" ",dec=".")
/Henrik
On Sat, Nov 23, 2019 at 11:55 AM Duncan Murdoch
wrot
The folder must exist. If not, .libPaths() *silently* ignores it. Could
that be it?
Henrik
On Mon, Oct 21, 2019, 02:32 Jinsong Zhao wrote:
> Hi there,
>
> I have a computer run Win10 with user names in Chinese. I installed R on
> it. It can run normally. When I installed a
try with a single package installed, e.g.
install.packages("glue"). Does that also give an error?
/Henrik
On Wed, Jan 16, 2019 at 11:10 AM Jeff Newmiller
wrote:
>
> I don't know specifically where that error comes from... but I can think of
> two possible directions to
ipt option
to silence all R startup stdout and/or stderr output? For example,
Rscript --quiet-startup -e "Rcpp:::LdFlags()"`
/Henrik
PS. It's probably better to output to stderr in .Rprofile, e.g. by
always using message() instead of cat(
deparse(graphics::box)
/Henrik
On Thu, Sep 27, 2018 at 3:30 AM Sigbert Klinke
wrote:
>
> Hi,
>
> I want to have a function, e.g. graphics::box, as text.
> Currently I'am using
>
> deparse(eval(parse(text='graphics::box')))
>
> It is important that
On Mon, Sep 17, 2018 at 12:56 PM Zhihao Huang wrote:
>
> Hi Henrik,
>
> Thanks for the suggestions! I tried your approach, and obtained the following
> output, which is pretty similar to the previous ones.
>
> > cl <- future::makeClusterPSOCK(1, outfile = NULL, verbos
Hi,
did you see my answer on StackOverflow? Specifically, if you set
argument 'outfile = NULL' to either of those two functions, you'll get
a little bit more information that *might* provide some clues.
/Henrik
On Sun, Sep 16, 2018 at 5:38 PM Zhihao Huang wrote:
>
> Hi
On Thu, Sep 13, 2018 at 7:12 PM Rich Shepard wrote:
>
> On Thu, 13 Sep 2018, Henrik Bengtsson wrote:
>
> >> sink('stat-summaries/estacada-se-precip.txt')
> >> print(summary(estacada_se_wx))
> >> sink()
> >>
> >> wh
xt'
>
> generates the same error
"same error" as what? (ambiguity is the reason for not being able to
help you - all the replies in this thread this far are correct and on
the spot)
BTW, not that it should matter, what is your opera
r(s) to help you by being
as explicit as possible what you've tried (i.e. cut'n'paste your
code), provide error messages (cut'n'paste) you get, if any, and/or
what you mean by "don't sit well with R" (that can mean many different
things).
/Henrik
> What is t
t R CMD check pick this up, that is, didn't it report that 'nphi'
is a "global" variable?
/Henrik
>
> It seems that passing a non-existent value as an argument to a Fortran
> subroutine can *sometimes* confuse it. Understandably.
>
> I think that this "n
z2zooc(4,3)904
14z20zooc(4,0)616
15 z3zoo 8528
16 z4zoo 5592
17 z5zoo 5792
Henrik
On Sat, Jul 28, 2018, 08:22 Jeff Newmiller wrote:
> You ca
122923’ (29 bytes)
Warning message:
In check_rprofile_eof(all = all, fix = fix, backup = backup, debug = debug) :
SYNTAX ISSUE FIXED: Added missing newline to the end of file
~/.Rprofile, which otherwise would cause R to silently ignore the file
in the startup process.
>
/Henrik
On Wed, Jul 25,
thub.io/drat/', type='source'))
> loadedNamespaces()
[1] "compiler" "graphics" "utils" "grDevices" "stats" "datasets"
[7] "methods" "spData""base"
## Now, spData is on the se
more used to seeing functions and not data
object. Another well-known example of this is:
> base::pi
[1] 3.141593
So, this 'x' is *not* in your global workspace and you cannot remove
it without unloading the package.
/Henrik
On Mon, Jul 23, 2018 at 12:30 PM Jeremie Juste wro
[2] "/home/hb/R/x86_64-pc-linux-gnu-library/3.5"
[3] "/home/hb/R/x86_64-pc-linux-gnu-library/3.6"
/Henrik
On Thu, Apr 26, 2018 at 11:41 AM, Akhilesh Singh
wrote:
> You are right. I do take backups. But, this time I was too sure that
> nothing will go wrong. But, this w
I guess I misread your question. /Henrik
On Wed, Apr 11, 2018 at 12:15 PM, Marcos Fiorini
wrote:
> Hi Albrecht, thanks for your return.
>
> I'm using the SUSE Linux Enterprise Server 11 (x86_64) PATCHLEVEL = 4 and
> not the openSUSE. Do you know if exist a compatibility li
all from source. Then
you can go back and forth between version whenever you'd like.
/Henrik
On Wed, Apr 11, 2018 at 8:31 AM, Marcos Fiorini wrote:
> Hi everyone.
>
> I need an information about compatibility of R and Suse Linux. I have
> installed R 3.2.1 in Suse Linux 11 S
69 3265472
and another 59 where isTRUE() can be used:
$ grep -E "identical[(][^,]+,[ ]*TRUE[)]" -r --include="*.R" | grep -F
"/R/" | wc
59 3075021
/Henrik
On Tue, Mar 13, 2018 at 9:21 AM, Doran, Harold wrote:
> Quite possibly, and I’ll look i
On Sun, Mar 4, 2018 at 3:23 PM, Duncan Murdoch wrote:
> On 04/03/2018 5:54 PM, Henrik Bengtsson wrote:
>>
>> The following helps identify when .GlobalEnv$.Random.seed has changed:
>>
>> rng_tracker <- local({
>>last <- .GlobalEnv$.Random.seed
>>
910
random 510 1 8 7 9 3 510 4
pid32199 32199 32199 32200 32200 32200 32200 32201 32201 32201
To base the RNG on the current RNG seed (== .GlobalEnv$.Random.seed),
one can use 'future.seed = TRUE'. For performance reasons, I choose
the def
r.max
port <- 11000 + 1000 * ((ran1 + unclass(Sys.time()) / 300) %% 1)
if(is.null(seed)) ## there was none, initially
rm( ".Random.seed", envir = .GlobalEnv, inherits = FALSE)
else # reset
assign(".Random.seed", seed, envir = .GlobalEnv, inherits = FALSE)
/Henrik
On Sun, Ma
t needs
to be set as in Bill's example above, or similarly:
export TMPDIR=/tmp/RTMP-BILL
/Henrik
>
>
>
> Bill Dunlap
> TIBCO Software
> wdunlap tibco.com
>
> On Fri, Feb 23, 2018 at 10:52 AM, Kumar Mainali wrote:
>
>> I would like to change where R stores the
, by = 12), FUN = function(offset) {
rowMaxs(X[, offset + 1:12])
})
Subsetting data frames by columns is already efficient, so the same
argument does not apply there.
/Henrik
On Tue, Feb 20, 2018 at 10:00 AM, Ista Zahn wrote:
> On Tue, Feb 20, 2018 at 11:58 AM, Bert Gunter
> wrote:
>
&g
alhost PORT=11414 OUT=/dev/null
TIMEOUT=2592000 XDR=TRUE
--
Manually start worker #2 on 'localhost' with:
nice --adjustment=19 '/usr/lib/R/bin/Rscript'
--default-packages=datasets,utils,grDevices,graphics,stats,methods -e
'parallel:::.slaveRSOCK()' MAST
You could try with png2() in the R.devices package, which is just a
convenient wrapper around the bitmap() device which can also produce PNGs.
It's not perfect but it might get you going.
Henrik
On Feb 1, 2018 08:24, "Sariya, Sanjeev" wrote:
> Thanks for your reply. I searche
7.2 3.2 6.0 1.8 virginica
127 6.2 2.8 4.8 1.8 virginica
What's not show here is that the colored output (supported by many
terminals these days) also highlights exactly which elements in those
rows differ.
/Henrik
On Sun,
To expand on what Bert suggests. Use:
loadToEnv <- function(file, ..., envir = new.env()) {
base::load(file = file, envir = envir, ...)
}
envA <- loadToEnv("a.RData")
envB <- loadToEnv("b.RData")
and then access the objects in environments envA and envB using
environment access methods, e.g.
,
/path/to/R/etc/Renviron.site).
It sounds like you're trying to set up a site-wide package library to
be shared among users. If so, add a line:
R_LIBS_SITE=/some/where/else/R/site-%p-library/%v
and make sure that folder exists, otherwise it's silently dropped from
.libPaths().
/
The 'webshot' package (on CRAN) can do this.
Henrik
On Jan 6, 2018 05:27, "Christofer Bogaso"
wrote:
> Hi,
>
> I would appreciate if someone can give me a pointer on how to save a
> webpage programmatically using R.
>
> For example, let say I have thi
", file.path(R.home("bin"), "Rscript")))
which is backward compatible with parallel::makePSOCKcluster() but
provides you with more detailed control. Try adding verbose = TRUE to
see what the exact call looks like.
/Henrik
On Sun, Dec 3, 2017 at 7:35 PM, Andreas Leha
wr
losophy.
However convenient GitHub / GitLab / ... is for development etc, it
certainly does not provide scientific archiving - in that sense it is
no different than sharing packages on Dropbox, Google Drive, etc.
/Henrik
On Mon, Oct 2, 2017 at 10:25 AM, Jeff Newmiller
wrote:
> I tend
I'm not sure I follow what.the problem is. Are you trying to
set R_LIBS_USER but R does not acknowledge it, or do you observe something
in R that you didn't expect to be there and you are trying to figure out
why that is / where that happens?
Henrik
On Sep 16, 2017 07:10, "Ren
ry(parallel); getOption('mc.cores')"
NULL
$ MC_CORES=2 Rscript -e "library(parallel); getOption('mc.cores')"
[1] 2
$ MC_CORES=2 Rscript -e "options(mc.cores = 4); library(parallel);
getOption('mc.cores')"
[1] 4
/Henrik
On Fri, Aug 25, 2017
t[i]) rather
than paste('folder01',lists[i],sep='/').
FYI 2; if you use list.files(path = "folder01", full.names = TRUE),
you get the full paths rather name just the file names, i.e. you don't
have to use file.path().
/Henrik
On Thu, Jun 29, 2017 at 12:04 PM,
s a pre-processor to those formats).
Hope this helps
Henrik
On Thu, Jun 1, 2017 at 9:35 AM, Charles C. Berry wrote:
> On Thu, 1 Jun 2017, POLWART, Calum (COUNTY DURHAM AND DARLINGTON NHS
> FOUNDATION TRUST) via R-help wrote:
>
>> Before I go and do this another way - can I chec
C^C
^\Quit (core dumped)
On my default Ubuntu 16.04 terminal, R 3.3.3 hangs and does not
respond to user interrupts (SIGINT), but it does respond to Ctrl-\
(SIGKILL).
A workaround is to pass the expression via standard input to R, e.g.
$ echo "$long_expression" | R --no-save
/Henrik
ovide a proper reply is then hard - like
trying to give a scientific presentation when you don't know who's in
the audience. This happens all the time and most people quickly picks
up what the expectations are and then get a smoother ride going
forward.
/Henrik
PS. With the risk of add
Did you try any of the troubleshooting I suggested? If you do that, I'm
99.99% certain it'll help you to resolve this.
Henrik
On Apr 17, 2017 03:07, "Bruce Ratner PhD" wrote:
David:
When I launch Rstudio the effects of the Rprofile do not show, e.g., I want
the prompt to
#x27;C:\Users\hb\Documents\.Rprofile'
If you don't see the warning message, you should be fine.
Finally, an easy way to setup a ~/.Rprofile startup file is to do it
from within R, e.g.
> cat('options(prompt="R> ")\n', file = "~/.Rprofile")
> cat(&#x
d its
community the great experience it is today.
Thank you!
Henrik
__
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.h
oe\\Documents\\.Rprofile"
For instance, to change what your R prompt looks you can add this from
within R as:
> cat('options(prompt = "> R ")\n', file = f, append = TRUE)
Hope this helps
Henrik
On Fri, Mar 24, 2017 at 2:36 AM, Bruce Ratner PhD wrote:
> Henrico:
&g
Quick comment: sapply() / parSapply() can behaves "unexpectedly". To
troubleshoot this, use parLapply() instead to see if you at least get the
individual results you think you should get.
Henrik
On Feb 2, 2017 08:03, "Art U" wrote:
> Hello,
>
> I have a data orig.r
can query the uptime of the
machine by reading from /proc/uptime:
$ cat /proc/uptime
332826.96 661438.10
$ cat /proc/uptime
332871.40 661568.50
You can get all IDs (PIDs) of all processes currently running:
$ ls /proc/ | grep -E '^[0-9]+$'
and for each process you there are multiple
ge (for any language;
https://github.com/HenrikBengtsson/R.utils/blob/2.5.0/R/withTimeout.R#L113-L114)
this way and returns an error of class TimeoutException.
FYI 2, there is as 'Working group for standard error (condition)
classes' proposal to the RConsortium "wishlist", cf.
htt
On Windows 32-bit I think (it's been a while) you can push it to 3 GB but
to go beyond you need to run R on 64-bit Windows (same rule for all
software not just R). I'm pretty sure this is already documented in the R
documentation.
Henrik
On Nov 22, 2016 19:49, "Ista Zah
On Nov 13, 2016 13:54, "Henrik Bengtsson"
wrote:
>
> It looks like a bug. I don't think c.Date() is every called, because:
>
> > trace(c.Date, tracer = quote(message("c.Date() called")))
> Tracing function "c.Date" in package "base
-21" "1997-05-22" ...
Alternatively, one can use append() which works like c() if no other
arguments are specified:
> x <- foreach(i=1:10100, .combine = append) %do% { as.Date(i) }
> str(x)
Date[1:101], format: "1997-05-19" "1997-05-20" "1997-05-21"
load files
atomically, i.e. it either gives you a fully downloaded file or not
all. In your case, you might still end up with a temporary corrupt
file, but at least it will have a filename that is different than the
one you ask for.
Hope this helps
/Henrik
On Wed, Sep 28, 2016 at 9:32 PM, Fabi
[,"col"] <- idxs[,"col"] + 1L
> idxs
row col
[1,] 3 3
[2,] 1 4
[3,] 2 4
[4,] 2 5
> df[idxs] <- 1
> df
[,1] [,2] [,3] [,4] [,5]
[1,]00110
[2,] NA0111
[3,]0110 NA
/Henrik
On Thu, Sep
nteger", size=4L)
f <- readBin(, what="double", size=4L)
s <- readBin(ss, what="integer", size=2L)
Put into a 3-by-K data.frame:
data <- data.frame(i=i, f=f, s=s)
/Henrik
On Sun, Sep 18, 2016 at 8:02 AM, Philippe de Rochambeau wrote:
> I would gladly
) > 0) loop over with a
try(unloadNamespace(pkg)) until all are unloaded. At the end, run
R.utils::gcDLLs() too (now on CRAN).
unloadNamespace("foo") should result in the same as
detach("package::foo", unload=TRUE) [anyone correct me if I'm wrong].
Hope this helps
H
hecking loading without being on the library search path ... OK
For further details on my thoughts on this, see
https://github.com/HenrikBengtsson/Wishlist-for-R/issues/29.
Hope this helps
Henrik
On Tue, Sep 13, 2016 at 6:05 AM, Alexander Shenkin wrote:
> Hello all,
>
> I have a number of
you're logging into is running Linux:
Before anything else, did you try to save elsewhere than to your
/home/ folder/account? Try /tmp/. That probably / hopefully doesn't
count to your account quota (and it gets wiped at every reboot).
There's also /var/tmp/ (a bit more persistent st
u might want to consider using:
paste0(tempdir(), filename)
It is specific and temporary to the R session running though, so if
you want to store things across R sessions, tempdir() is not what you
want to use.
/Henrik
On Wed, Aug 31, 2016 at 8:54 AM, Uwe Ligges
wrote:
>
>
> On 3
fo on how to track down the process that looks the file.
/Henrik
On Wed, May 11, 2016 at 9:47 AM, wrote:
> Duncan,
>
> thanks for the hint.
>
> I have done it correctly in R fashion
>
> ## capture all the output to a file.
> zz <- file("C:/Temp/all.Rout"
On Wed, Apr 20, 2016 at 1:25 AM, Martin Maechler
wrote:
>>>>>> Henrik Bengtsson
>>>>>> on Tue, 19 Apr 2016 14:04:11 -0700 writes:
>
> > Using the Matrix package, how can I create a row-oriented sparse
> > Matrix from scratch pop
ult for coercing "dgCMatrix" to "dgRMatrix"
> as(Cr, "dgRMatrix")
Error in as(Cr, "dgRMatrix") :
no method or default for coercing "dgTMatrix" to "dgRMatrix"
Am I doing some wrong here? Or is this what means that the package is
opt
On Fri, Mar 18, 2016 at 8:28 PM, Roy Mendelssohn - NOAA Federal
wrote:
> Hi Henrik:
>
> I want to do want in oceanography is called an EOF, which is just a PCA
> analysis. Unless I am missing something, in R I need to flatten my 3-D matrix
> into a 2-D data matrix. I can fit
ixStats")
> rowVars(X, dim.=c(6,4))
The above effectively calculates rowVars(matrix(X, nrow=6, ncol=4))
without making copies.
(*) By partial I mean that this is a feature that hasn't been pushed
through to all of matrixStats functions, cf.
https://github.com/HenrikBengtsson/matrixStats
Don't know what `population` is, but a simple assignment
MVAR <- population
may provide what you need. Note, no c(). For example,
> foo <- rnorm
> foo(3)
[1] -0.08093862 -0.87827617 1.52826914
/Henrik
On Wed, Feb 3, 2016 at 9:41 AM, Amoy Yang via R-help
wrote:
> There
of RAM, i.e. 29327331 GiB =
28640 TiB = 28 PiB. Storing such a large matrix even on file is not
possible.
In other words, you need to figure out how to approach your original
problem in a different way.
/Henrik
On Sun, Jan 24, 2016 at 8:46 AM, li li wrote:
> Hi all,
> I am doin
automatically taken care of. You can plot to multiple image types at
the same time, e.g.
devEval(c("png", "pdf", "eps"), name="myplot", aspectRatio=2/3, {
plot(10:1)
})
There are also "quick" functions such as:
toPNG("myplot", as
On Sat, Dec 12, 2015 at 6:08 AM, Hadley Wickham wrote:
> On Sat, Dec 12, 2015 at 3:54 AM, Martin Maechler
> wrote:
>>>>>>> Henrik Bengtsson
>>>>>>> on Fri, 11 Dec 2015 08:20:55 -0800 writes:
>>
>> > On Fri, Dec 11, 2015 at 8
se it will tell you whether
it's !length(x) or mode(x) == "logical" that is FALSE. It's as if you
wrote:
stopifnot(!length(x))
stopifnot(mode(x) == "logical")
/Henrik
>
>
>>
>> stopifnot(logical(0) == 1)
>> stopifnot(logical(0) == TRUE)
>
> filenames <- c("Q_Read_prist#1...@1.xls", "Q_Read_prist#1...@10.xls",
> "Q_Read_prist#1...@2.xls")
> filenames <- gtools::mixedsort(filenames, numeric.type="decimal")
> filenames
[1] "Q_Read_prist#1...@1.xls" "Q_Read_pri
vignettes using one of the above formats,
choice of vignette format does not matter these days. They're all
equally easy to use and incorporate in packages.
Cheers,
Henrik
On Tue, Nov 17, 2015 at 11:09 AM, Duncan Murdoch
wrote:
> On 17/11/2015 10:42 AM, Marc Schwartz wrote:
>>
#x27; gets assigned, you could
preprocess you R Markdown file with RSP, but for this to work out of
the box you basically need to know the value
length(specLibrary@ionlibrary) before your R Markdown code is
evaluated, i.e. before you compile the Rmd file. Your build pipeline
would then look someth
save a file the first
time. You can try to put quotation marks to force it not to, e.g.
"RHtestsV4.r".
Henrik
On Nov 6, 2015 15:23, "Chattopadhyay, Somsubhra" wrote:
Dear all,
I am a beginner in R and want to ask a simple question. I have a code file
in text format which I
the list.
That will allow you to make sure your message went out.
/Henrik
On Wed, Oct 14, 2015 at 3:54 AM, Ivan Calandra
wrote:
> Maram,
>
> I have received both of your e-mails on this topic, so they made it to the
> list.
> There is the option " Receive your own posts to the
tch
data <- read.table(textConnection(kkk),
sep="\t",
header = TRUE,
colClasses = rev(colClasses))
str(data)
### 'data.frame': 1 obs. of 2 variables:
### $ a: num 3.14
### $ b: chr "x"
Let's hope that the ab
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