[R] read.alignment() crashes

Hi, I am trying to read a fasta file with >15K alignedd sequences. However it crashes showing a runtime error. I have tried both R.3.2.3 and R.3.2.1 under windows 7. A smaller fasta file works perfectly fine in either case. library(seqinr) myseqs <- read.alignment("aligned_seqs.fasta",format="fa

Re: [R] Non-uniformly distributed plot

, spotfire can achieve this beautifully. Eric From: Dennis Murphy [mailto:djmu...@gmail.com] Sent: Friday, December 24, 2010 12:43 PM To: Eric Hu Cc: r-help@r-project.org Subject: Re: [R] Non-uniformly distributed plot Hi: One way to combine Jorge's and Da

Re: [R] Non-uniformly distributed plot

Thanks David. I am reposting the data here. Eric > Hi, > > I would like to plot a linear relationship between variable x and y. > Can anyone help me with scaled plotting and axes so that all data > points can be visualized somehow evenly? Plaint plot(x,y) will > generate condensed points n

[R] Non-uniformly distributed plot

Hi, I would like to plot a linear relationship between variable x and y. Can anyone help me with scaled plotting and axes so that all data points can be visualized somehow evenly? Plaint plot(x,y) will generate condensed points near (0,0) due to several large data points. Thank you. Eric > x

Re: [R] Pipeline pilot fingerprint package

Hi Rajarshi, Here is a post I found from Pipeline pilot community help pages: https://community.accelrys.com/message/3466 Eric -Original Message- From: Rajarshi Guha [mailto:rajarshi.g...@gmail.com] Sent: Wednesday, October 13, 2010 7:52 AM To: Eric Hu Cc: r-help@r-project.org

[R] Pipeline pilot fingerprint package

Hi, I am trying to see if I can use R to perform more rigorous regression analysis. I wonder if the fingerprint package is able to handle pipeline pilot fingerprints (ECFC6 etc) now. Thank you, Eric [[alternative HTML version deleted]] __ R-h

[R] Plot time range with rect or boxplot

Hi, I am trying to use rect (R2.11) to plot a set of data as following > data CompanyPt Pri Pub 1AWO520 8/5/09 2/11/10 2BWO893 7/30/03 2/24/05 3AWO258 12/8/08

[R] Plot data on year/mon/day

Hi, I am trying to use rect (R2.11) to plot a set of data as following Company Pt Pri Pub A W200 4/5/2009 3/11/2010 B W293 2/30/2003 3/24/2005 A W258 2/8/2008 8/17/2010 C W248 5/13/2009 1/2/2010 %y <- seq(0,0.5*(length(company)-1),0.5) %h <- 0.1 %rect(pri, y-h, pub, y+h, col=