[R] Function with large nested list

ep things compact. But I can provide additional information if helpful. Thanks it advance for thinking along!! Kind regards, Emily The code: decision_algorithm <- function(AB_list, dataset_ab = data.frame(), diagnose = 'cystitis', diabetes_status = "nee", kathete

[R] Split String in regex while Keeping Delimiter

= “(?=[\\+-]{1,3}\\s)+, perl=TRUE)   Which results in: c(“leucocyten “, “+”,  “gramnegatieve staven “, “+”, “+”, “+”,  “grampositieve staven ++”) c(“leucocyten “, “–“, “grampositieve coccen +”)     Is there a function or regular expression that will make this possible?   Kind regards, Emily

Re: [R] Error with install.packages using R v 3.5.1 and 3.5.2

ages. This could > be related to (1) above or be unrelated. You might confirm on this > discussion thread whether this function runs okay for you. > > > > For future reference, use CRAN packages for examples on this mailing > list to clarify that the problem is relevant here. &

Re: [R] Error with install.packages using R v 3.5.1 and 3.5.2

t version-specific libraries... e.g. R 3.4 and R 3.5 > do not share packages. > > [1] https://support.bioconductor.org > > On January 15, 2019 11:51:16 AM PST, Emily Wan > wrote: > >Hi - > >I am working with R on a Window Server 2012 R2 - I had originally > >installed > >R (

[R] Error with install.packages using R v 3.5.1 and 3.5.2

Hi - I am working with R on a Window Server 2012 R2 - I had originally installed R (v3.5.1) in September/October 2018 and have used multiple packages without incident. However, last week, when attempting to install additional packages (using install.packages() or Bioconductor's BiocManager::install

[R] Using R Markdown for creating reproducible manuscripts – new blog post from eLife Labs

/elife-news/composing-reproducible-manuscripts-using-r-markdown?utm_source=Labs&utm_campaign=Rhelp If you’d like more information, please don’t hesitate to contact me. Kind regards, Emily -- *eLife's early-career researcher travel grants 2017 are now open for applications. Vis

[R] Issue replacing dataset values from read data

as wondering what the issue is here, so as to look out for and avoid it in the future. Apologies for the lack of reproducible code; I haven't yet reproduced the problem with generated data. Much thanks in advance. Best regards, Emily [[alternative HTML version deleted]] ___

[R] How do you add the x-bar (mean of x) symbol and show a calculated mean in the title of a histogram?

I am trying to get the calculated mean and the symbol of x-bar to show in the title of multiple histograms in R. Here is the code I have for one of the histograms: hist(outcome[,11], main= "Heart Attack (expression(bar(x))) = (mean(outcome[,11]))", xlab ="30-day Death Rate", xlim = c(min(hist_min)

[R] Male and female signs as subscript in plot

"Male"["\u2642"])) displays the word "Male" followed by a subscript of "", i.e. the symbol is not displayed. How can I make the male symbol show as a subscript? Many thanks for any suggestions! Cheers, Emily [[alternative HTML version deleted]]

Re: [R] Log scales

ls), length.out=n) rect(0, y[1:(n-1)], 1, y[2:n], col=cols) axis(4, at=y, labels=mylevels) } Many thanks, Emily Uwe Ligges wrote: On 17.05.2013 13:34, Emily Gleeson wrote: Dear All, I have a query about using log scales for filled.contour plots. I have used log values on the x and y ax

[R] Log scales

added 1000 to the % values before taking the log. I'd like the original % values to appear on the contour lines and in the contour colourbar labelling. I'd appreciate any suggestions you have. Many thanks

Re: [R] Text Encoding

NA was used" > iconv(test, "JAVA", "UTF-8") [1] "4.5µg of cDNA was used" This may also impact anyone using JSON with R. Posting here in case it helps anyone else. =) -Emily On Sat, Apr 6, 2013 at 10:37 AM, David Winsemius wrote: > > On Apr 5, 2013,

[R] Text Encoding

t;latin1", "UTF-8") [1] "4.5\\u00B5g of cDNA was used" And, I tried Encoding, to see if I could figure that out, but it returns "unknown" on my string. > Encoding(test) [1] "unknown" Anyone have any ideas on h

Re: [R] scan not working

Thank you all - these suggestions have been very helpful! I've got it doing what I wanted know, and I appreciate the help! Emily On Jan 27, 2013, at 1:18 PM, Rui Barradas wrote: > Hello, > > Try the following. Create a file called test.R with these instructions: > > cmd

Re: [R] scan not working

like a simple letter code (e.g. "cro"), and then have it append that to the output file names, so they are, for example: "qvalues_cro" and "pvalues_cro"? Thank you very much, Emily On Jan 27, 2013, at 4:34 AM, peter dalgaard wrote: > > On Jan 27, 2013

[R] scan not working

Hi all, I am trying to use the scan function in an R script that I am calling from the command line on a Mac; at the shell prompt I type: $ Rscript get_q_values.R LRT_codeml_output in the hope that LRT_codeml_output will get passed to the get_q_values R script. The first line of that script

[R] Lavaan Package - How to Extract Residuals in Data Values

, as well as some by James Grace. I have also tried to manipulate some other codes, but I can't get it. I may have missed something as I am relatively new to R, but it is not clear to me how to do this. Any help would be very much appreciated. Thank you, Emily Zimmerman

[R] Changing many csv files using apply?

names=NA) } It's a little slow though, so I would like to get rid of the for loop but preserve its function. Would it be possible to use sapply() or something similar? Any insight would be appreciated! Best regards, Emily __ R-help

[R] How to delete rows from dataframe that sum to zero

Hello, I am trying to figure out how to delete all rows which sum to zero from a dataframe. I do not have a column with the sum of each column yet, so perhaps that would need to be done first? Thank you for any help anyone can offer with this. Emily PS sorry if this question has already been

[R] Equation as a character string

cified value of x (e.g. given x <- 6, what is the result of the equation). Thanks in advance for any insight anyone may be able to offer. Emily [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.

Re: [R] glm or transformation of the response?

break and any help would be greatly valued! -Emily Bellush q...@iup.edu Indiana University of Pennsylvania [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do re

[R] R 2.14 png X11

x11proto-bigreqs-de 1:1.1.0-1 X11 Big Requests extension wire protocol x11proto-composite- 1:0.4.1-1 X11 Composite extension wire protocol Does anyone have any suggestions for what this server might be missing? Are there any other steps/sources/test I might look into? Thank

[R] Broken link on daba.lv

Hello , I was taking a look at your website and I noticed that one of the links you suggest in http://www.daba.lv/Adreses/RS_GPS.shtml isn't working properly. The link in question is this one: http://instruct1.cit.cornell.edu/~agl1/Hexagone.html. You'll find a similar resource published here:

[R] CCF of two time series pre-whitened using ARIMA

m assuming Method 2 is the correct method since it gives the peak correlation at the correct lag (lag 3), but I'm wondering why Method 1 does not work. Could anyone explain this? Thanks in advance! Emily [[alternative HTML version deleted]]

[R] parallel processing for bridge and blasso

? That is, is parallel processing possible for the bridge and blasso functions by using the multicore package? Kind Regards Emily Deomano BSES Limited  Q Australia Internet e-Mail Disclaimer PRIVILEGED - PRIVATE AND CONFIDENTIAL: This email and

Re: [R] R error using Survr function with gcmrec

f (length(unique(id)) >= length(event[event == 0])) { stop("Data doesn't match. Every subject must have a censored time") } if (length(unique(event)) > 2 | max(event) != 1 | min(event) != 0) { stop("event must be 0-1") } ans <-

Re: [R] R error using Survr function with gcmrec

2010 at 2:54 PM, David Winsemius wrote: > > On Nov 11, 2010, at 2:50 PM, David Winsemius wrote: > > >> On Nov 11, 2010, at 2:09 PM, Emily wrote: >> >> >>> I'm having the same problem >>> >> >> (???: from a three year-old posting for whi

Re: [R] R error using Survr function with gcmrec

I'm having the same problem and was wondering whether you ever found a solution? It gives me the error "Error in Survr(id, time, event) : Data doesn't match. Every subject must have a censored time" even though all my subjects are right-censored, and to be sure, I've even used the addCenTime funct

[R] newbie question on importing and parsing file by row

R and for each row calculate a p value using the fisher test. Using each p value I will do multiple a correction. I am unsure how to automate this process. Many thanks, Emily [[alternative HTML version deleted]] __ R-help@r-project.org mai

[R] what is the "NOT IN" operator

I tried (i)! %in% and (ii) ^%in% and both resulted in a "could not find function" error. Kind Regards Emily Deomano | Biometrician BSES Limited | ABN 29 103 760 005 | PO Box 86 | 50 Meiers Road | Indooroopilly Q 4068 Australia P: +61 7 3331 3304 | M: +61 408 656 452

[R] legend outside plot area

Hi, please can you help me. When I add a legend to a boxplot it appears inside the plot area, how do you get it into the margins? I have already changed the parameters so there is space for it on the margin on the right hand side of the graph. Thanks, Emily

[R] running aov() and lme() on 64-bit

0 405 0.69772 0.7268 Regards, Emily Emily Deomano Biometrician BSES Limited Postal Address: PO Box 86 Street Address: 50 Meiers Road Indooroopilly QLD 4068 Australia Ph: +61 (0) 7 3331 3306 Mobile: +61 (0) 408 656 452 Fax: +61 (0) 7 38710383 Email: edeom...@bses.org.aumailto:j

[R] Interpretation of residual variance components and scale parameters in GLMMs

values for random variance components, with 1.010882 listed as the "residual StDev" (model2 = glmmPQL(successes~1, random =(~1|status/maleID),family = poisson, data = d). Does that mean that the residual variance is actually 1.010882^2? Or should it be interpreted as a scale parameter, as in lmer