Re: [R] Cumulative Incident Function does not go to end of dataset

2016-09-24 Thread Donald Catanzaro
> > The help page for Cuminc says that: "Cuminc is now simply a wrapper around > survfit of the survival package with type="mstate", only maintained for > backward compatibility. The survfit object is kept as attribute > (attr("survfit")), and the print, plot and

Re: [R] Cumulative Incident Function does not go to end of dataset

2016-09-23 Thread Donald Catanzaro
something here. Is there a way to get mstate to report the entire CIF ? -- - Don Donald Catanzaro PhD dgcatanz...@gmail.com 16144 Sigmond Lane Lowell, AR 72745 479-721-2533 [[alternative HTML version deleted]] __ R-help@r-project.org mailing l

Re: [R] Sensitivy / Specificity and nulls

2013-08-29 Thread Donald Catanzaro
1 1 0 F 0 On Thu, Aug 29, 2013 at 7:32 AM, Michael Dewey wrote: > At 15:18 28/08/2013, Donald Catanzaro wrote: > >> Good Day All, >> >> I am working with a diagnostic test and comparing the new test to an old >> test. Normally I would be able to calcul

Re: [R] Sensitivy / Specificity and nulls

2013-08-28 Thread Donald Catanzaro
advice. Perhaps someone on the list may have a more constructive comment. On Wed, Aug 28, 2013 at 9:25 AM, Bert Gunter wrote: > This is not an R question. Post elsewhere. Better yet, contact a local > statistical consultant. > > -- Bert > > On Wed, Aug 28, 2013 at 7:18 AM

Re: [R] Sensitivy / Specificity and nulls

2013-08-28 Thread Donald Catanzaro
wards classification but I cannot seem to find the appropriate calculations. Can someone point me to some web resources to determine the appropriate method to be able to deal with the NULLs ? Resources within the medical realm would be better (because the rest of the folks would understand them better)

Re: [R] Plotting series with no data in xyplot

2011-11-16 Thread Donald Catanzaro, PhD
Good Day All, I am working on some xyplots using the Lattice Library. My X-axis is the date and I am reproducing charts similar to those found in the R Gallery (see here: http://www.sr.bham.ac.uk/~ajrs/R/gallery/plot_midday_weather_profiles.txt) However, the key difference is that some of

Re: [R] Import ASCII data using a .sas program

2010-04-14 Thread Donald Catanzaro, PhD
Good Day, I have several ASCII data files that I would like to import into R. They all have a SAS import file which is used to bring the data into SAS and I am hoping to use this to bring the data into R. There are lots of variables involved and the ASCII data file is 2308 columns long so I

Re: [R] Proper / Improper scoring Rules

2009-08-12 Thread Donald Catanzaro, PhD
f the way because I can find out max(out.vector) but I still need to know what column the max is in. I think the problem is that I don't know how to manipulate data frames and vectors in R and need some guidance -Don Don Catanzaro, PhD Landscape Ecologist dgcatanz...@

Re: [R] Proper / Improper scoring Rules

2009-08-07 Thread Donald Catanzaro, PhD
Hi All, I am working on some ordinal logistic regresssions using LRM in the Design package. My response variable has three categories (1,2,3) and after using the creating my model and using a call to predict some values and I wanted to use a simple .5 cut-off to classify my probabilities int

[R] Negative Binomial Predictions

2008-10-01 Thread Donald Catanzaro, PhD
Good Day All, I have a negative binomial model which I have developed using the MASS library. I now would like to develop some predictions from it. Running the predict.glm (stats library) using type="response" gives me a non-integer value which was rather puzzling. I would like to confirm

Re: [R] Cross Validation output

2008-09-26 Thread Donald Catanzaro, PhD
Good Day All, I have a negative binomial model that I created using the function glm.nb() with the MASS library and I am performing a cross-validation using the function cv.glm() from the boot library. I am really interested in determining the performance of this model so I can have confiden

Re: [R] Error message when calculating BIC

2008-09-25 Thread Donald Catanzaro, PhD
__ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.

Re: [R] Error message when calculating BIC

2008-09-24 Thread Donald Catanzaro, PhD
Hi All, Could someone help me decode what this error means ? > BIC(nb.80) Error in log(attr(object, "nobs")) : Non-numeric argument to mathematical function > BTW, nb.80 is a negative binomial glm model created using the MASS library with the call at the bottom of the message In the hopes of