[R] Windows: URL associations do not work in scheduled tasks

2015-08-17 Thread Dan Tenenbaum
Hi, I have a script called test.R which contains: browseURL("http://r-project.org";) It works fine when I run it interactively or with "R -f test.R" when logged in as the user 'biocbuild'. However, if I set up a Scheduled Task to run the script as that same user (with the XML definition below

[R] install.packages umask configuration

2013-07-09 Thread Dan Tenenbaum
Hi, The R-admin manual says: "If installing packages on a Unix-alike to be used by other users, ensure that the system umask is set to give sufficient permissions (see also Sys.umask in R). (To a large extent this is unnecessary in recent versions of R, which install packages as if umask = 022.)"

Re: [R] install "multtest" and "preprocessCore" packages in Bioconductor library

2011-11-30 Thread Dan Tenenbaum
multtest") > I don't know how to load these functions after they were saved? I am not a > computer person, so I don't know what to do when things don't work. You have already loaded the package; library(packagename) is the way to do it. This and the help() bit abov

Re: [R] install "multtest" and "preprocessCore" packages in Bioconductor library

2011-11-30 Thread Dan Tenenbaum
Hi Nguyen, > Subject: [R] install "multtest" and "preprocessCore" packages in > Bioconductor library > Date: Wed, 30 Nov 2011 09:57:36 -0800 > From: UyenThao Nguyen > To: r-help > CC: uth.ngu...@ucdavis.edu > > Hi All, > > I've tried to install these "multtest" and "preprocessCore" packages in

Re: [R] [BioC] arch=i386

2011-04-28 Thread Dan Tenenbaum
On Wed, Apr 27, 2011 at 4:46 AM, Stat Consult wrote: > Dear ALL > > I want to load "HTSanalyzeR", It 's necessary to load "igraph" package. > This time I see this error: > library(igraph) > >  library(HTSanalyzeR) > Loading required package: GSEABase > Loading required package: Biobase > Error: pa

Re: [R] Sending a null byte to a socket

2010-06-24 Thread Dan Tenenbaum
"" > close(con) Thanks Dan On Wed, Jun 16, 2010 at 12:52 PM, Dan Tenenbaum < dtenenb...@systemsbiology.org> wrote: > Hello, > > I am trying to write some code in R to communicate over sockets via the > STOMP protocol (http://stomp.codehaus.org/Protocol). > &

Re: [R] Sending a null byte to a socket

2010-06-24 Thread Dan Tenenbaum
Sorry to spam the list again, but I was wondering if anyone has a solution to this. It seems that writing nulls to sockets is a pretty common use case, so I would hope there is a way to do this. Thanks. On Wed, Jun 16, 2010 at 12:52 PM, Dan Tenenbaum < dtenenb...@systemsbiology.org>

[R] Sending a null byte to a socket

2010-06-16 Thread Dan Tenenbaum
Hello, I am trying to write some code in R to communicate over sockets via the STOMP protocol (http://stomp.codehaus.org/Protocol). As you can see, a null byte (ASCII 0) is used as the "over" signal. I'd like to be able to do something like this: write.socket(socket, "CONNECT\nlogin: me\npassco

[R] .Rprofile is being executed twice

2008-05-02 Thread Dan Tenenbaum
Hi, After updating to R 2.7, my .Rprofile executes twice on startup. I confirmed this by putting in the following line: print("starting .Rprofile...") When I start R, I see: [1] "starting .Rprofile..." [1] "starting .Rprofile..." This seems like the obverse of the following FAQ: http://cra