[R] Computing RLE and NUSE Scores

I am working on a project, and have been given a list of instructions as to how to analyze microarray data. I am to use the affy and affyPLM packages from Bioconductor. I used ReadAffy() to read in my CEL files, then called rma() to normalize the data. I now that this function returns an Expressio

[R] pamr.train()

I have recently started learning how to use R, and I am trying to create an False Discovery Rate plot for my data. I loaded the "pamr" package, and am using a data set with 11 columns: column 1 is a list of Gene IDs, column 2 is a list of Gene Symbols, and columns 3-11 are the dependency rates of d