Re: [R] cannot load pbdMPI package after compilation

quot;Rmpi",dependencies = TRUE, configure.args = c( "--with-Rmpi-include=/usr/local/openmpi/1.6.5/intel/13.1.3/include/", "--with-Rmpi-libpath=/usr/local/openmpi/1.6.5/intel/13.1.3/lib/", "--with-Rmpi-type=OPENMPI" )) No special options for pbdMPI : install.pac

Re: [R] cannot load pbdMPI package after compilation

Thank you, I will try contact the developper. Antoine Migeon Université de Bourgogne Centre de Calcul et Messagerie Direction des Systèmes d'Information tel : 03 80 39 52 70 Site du CCUB : http://www.u-bourgogne.fr/dsi-ccub Le 10/06/2013 08:19, Prof Brian Ripley a écrit : > On 10/06/20

[R] cannot load pbdMPI package after compilation

type = "b")if (w > LONG) prefix <- paste0(prefix, "\n ")}else prefix <- "Error : "msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L]))if (!silent && identical(getOpt

Re: [R] hierarchical clustering with pearson's coefficient

Anyone for that question? 2013/3/28 Pierre Antoine DuBoDeNa > Hello, > > I want to use pearson's correlation as distance between observations and > then use any centroid based linkage distance (ex. Ward's distance) > > When linkage distances are formed as

[R] hierarchical clustering with pearson's coefficient

Hello, I want to use pearson's correlation as distance between observations and then use any centroid based linkage distance (ex. Ward's distance) When linkage distances are formed as the Lance-Williams recursive formulation, they just require the initial distance between observations. See here:

[R] pearson's correlation and cross-correlation issue

Hello, I want to compute the pearson's correlation, but even for signals that are shifted. For example having two signals like: 1 1 2 1 1 and 1 2 1 1 1 the correlation is very low.. but if we shift them in the right we get much better correlation. I know that cross-correlation is used to find

[R] evaluation clusters

Hello, I was wondering if there is any package with several metrics for cluster estimation (estimating the k=2...10) (or evaluation..). Also if instead of euclidean distance in k-means I use some other kind of distance.. then for those evaluation metrics which takes into consideration the distanc

[R] time-series classification with k-nn

Hello, i am trying to apply k-nn classification for my time-series, however the euclidean distance is not the best choice as the features i use are not all normalized (others have values form 0-1 others are negative etc.) and also it doesn't do any feature evaluation and give different weights to

Re: [R] time-series statistics collection

> Brockwell/Davis (2002): Introduction to Time Series and Forecasting. > Cowpertwait/Metcalfe (2009): Introductory Time Series with R. > Cryer/Chan (2008): Time Series Analysis: With Applications in R. > > for some general introductions of using time series in r. > > > > > >

[R] time-series statistics collection

> > Hello, > > I am trying to collect several global measures or statistics for > time-series as well as packages of R that can compute them. I have found > several of them in papers and books, but the literature is so big i am sure > i am missing several of them. > > skewness > kurtosis > min > ma

[R] time-series statistics collection

Hello, I am trying to collect several global measures or statistics for time-series as well as packages of R that can compute them. I have found several of them in papers and books, but the literature is so big i am sure i am missing several of them. skewness kurtosis min max mean SD trend season

[R] [R-pkgs] New package "geotools"

NearToCode(zipCode("Paris"),7) Regards, Antoine Lucas. ___ R-packages mailing list r-packa...@r-project.org https://stat.ethz.ch/mailman/listinfo/r-packages __ R-help@r-project.org mailing list

[R] [R-pkgs] amap new version (multidimensional analysis)

makes amap even more convenient for gene expression analysis, but not only; amap provides a lot of tools for robust statistics (rank based metrics, robust principal component analysis) with very fast implementations. Antoine Lucas. ___ R-packages

Re: [R] Adding axis to an ellipse: "ellipse" package

cl[2,] segments(-v1[1],-v1[2],v1[1],v1[2]) segments(-v2[1],-v2[2],v2[1],v2[2]) The vectors don't seem to be scaled properly and I don't see what I am doing wrong. Any ideas? Thanks! Antoine -- View this message in context: http://r.789695.n4.nabble.com/Adding-axis-to-an-ellipse-elli

Re: [R] Adding axis to an ellipse: "ellipse" package

Thanks a lot Rolf, I knew it would be possible to do it that way but I was just curious to know if the ellipse package was offering such a feature. Thanks again for you help! Antoine Le 28 sept. 11 à 09:30, Rolf Turner-3 [via R] a écrit : > On 28/09/11 04:53, Antoine wrote: > >

[R] Adding axis to an ellipse: "ellipse" package

mportant that I can graphically show them. Is there an easy way to do so? Many thanks, Antoine -- View this message in context: http://r.789695.n4.nabble.com/Adding-axis-to-an-ellipse-ellipse-package-tp3847954p3847954.html Sent from the R help mailing list archiv

[R] Problem with caret + foreach + M5 combination

2), ada, affy, proxy, e1071, grid, elasticnet, SDDA, caTools, RWeka (>= 0.4-1), superpc, penalized, sparseLDA (>= 0.1-1), spls, sda, glmnet, relaxo, lars, vbmp, nodeHarvest, rrcov, gam, stepPlr, GAMens (>= 1.1.1), rocc, foba, partDSA, hda, fastICA, neuralnet,

Re: [R] Runtime Error! Keep on happening while using amap, anacor and ca pckg

Hi, Thanks for this detailed bug, I have fixed it. I upload a patch on cran (amap with version 0.8-3) Antoine. On Mon, 18 May 2009 14:20:21 +0200 Uwe Ligges wrote: > After Ana Kolar sent me some code in a private mesage: > > I reduced that to a minimal example that crashed R - due

[R] [R-pkgs] Amap new release

) * new rank-based metric: Kendall distance, use for both matrix distance computation, K-means, and hierachical clustering. Best. Antoine. ___ R-packages mailing list [EMAIL PROTECTED] https://stat.ethz.ch/mailman/listinfo/r-packages