Re: [R] lib default location

Nice alternative solution. Thanks Rolf. On Sat, May 21, 2016 at 6:30 PM, Rolf Turner wrote: > On 22/05/16 01:54, Uwe Ligges wrote: >> >> >> >> On 21.05.2016 14:49, Alba Pompeo wrote: >>> >>> Everytime I install a package from CRAN I receive this me

[R] lib default location

Everytime I install a package from CRAN I receive this message: Installing package into ‘/home/albap/R/x86_64-pc-linux-gnu-library/3.3’ (as ‘lib’ is unspecified) Should I set my lib? If so, what's the recommended path? Also, everytime I have to choose the mirror. Could I make one of them default

Re: [R] Warning when running R - can't install packages either

hat. > > >> On May 12, 2016, at 07:45, Alba Pompeo wrote: >> >> Hello. >> >> I've tried to run R, but I receive many warnings and can't do simple >> stuff such as installing packages. >> >> Here's the full log when I run it. >

[R] Warning when running R - can't install packages either

Hello. I've tried to run R, but I receive many warnings and can't do simple stuff such as installing packages. Here's the full log when I run it. http://pastebin.com/raw/2BkNpTte Does anyone know what could be wrong here? Thanks a lot. __ R-help@r-p

[R] Factor response and explanatory variables.

ou very much    Iker. __    Dr. Iker Vaquero-Alba    Visiting Postdoctoral Research Associate    Laboratory of Evolutionary Ecology of Adaptations    School of Life Sciences    Joseph Banks Laboratories    University of Lincoln   Brayford Campus, Lincoln    LN6 7DL    Unit

[R] Multinomial data

!  __    Dr. Iker Vaquero-Alba    Visiting Postdoctoral Research Associate    Laboratory of Evolutionary Ecology of Adaptations    School of Life Sciences    Joseph Banks Laboratories    University of Lincoln   Brayford Campus, Lincoln    LN6 7DL    United Kingdom    https://eric.exeter.ac.uk

Re: [R] Potencial bug in R.adjust ("holm" method)

I pool all the p-values in a massive column and adjust them in bulk?    Thank you very much for your help.   Iker  ______    Dr. Iker Vaquero-Alba    Visiting Postdoctoral Research Associate    Laboratory of Evolutionary Ecology of A

[R] Potencial bug in R.adjust ("holm" method)

on?    Thank you very much.    Iker __    Dr. Iker Vaquero-Alba    Visiting Postdoctoral Research Associate    Laboratory of Evolutionary Ecology of Adaptations,     School of Life Sciences, University of Lincoln,    Riseholme Park Campus, Lincoln    LN2 2LG,    UK.    https://eric.exeter

[R] p-values in "rpt.adj"

to grouping factor "ring" (or ID) and the bottom one is the one of grouping factor "year"? Which one should I report, according to what I am interested in?    Thank you very much in advance.    Iker  ______  

Re: [R] no slot of name "fixef" for this object of class "lmerMod"

del), do you mean "fixef(mod)" (as in my case "mod <- lmer(y ~ 1 + (1|group1)+(1|group2),verbose=FALSE)"?    Thank you very much again.   Iker  __    Dr. Iker Vaquero-Alba    Daphne du Maurier    Centre f

[R] no slot of name "fixef" for this object of class "lmerMod"

function is obviously longer.    Thank you very much in advance.    Iker __    Dr. Iker Vaquero-Alba    Daphne du Maurier    Centre for Ecology and Conservation    College of Life and Environmental Sciences    University of Exeter, Cornwall Campus    TR10

[R] Error with step and glmmML

following: model<-step(glmmML(var~1,cluster = id, family = poisson,data = data1),direction=c("both"),data=data1,scope=~x1+x2+x3+x4+x5+x6+x7+x8+x9+x10) Does anybody know where the problem could be? Thank you in advance, Alba -- View this message in context: http://r.789695.n4.n

Re: [R] [R-sig-ME] Help with lmer

I´m not an expert either, but from my own experience with those annoying messages, I can suggest you some precautions you should take: - First of all, make sure, in your ".txt" file, that you are using dots for separating decimals, NOT commas. - Before writing your model, test each o

[R] Plot confidence intervals

r any method I can apply in R, as I haven't found anything like that in the R book.    Thank you very much    Iker Vaquero-Alba    Centre for Ecology and Conservation    Daphne du Maurier Building    University of Exeter, Cornwall Campus    Treliever Road    TR10 9EZ Pen

[R] Error in MEEM

Hello everyone: It's the first time I write to this mailing list. Sorry in advance if my doubt has already been posted before, but I have been checking the archives and I haven't been able to find anything satisfactory. I am running a mixed effects model with nested effects (site and

[R] Step by significance

Does anybody know how to perform a step function by significance of p instead of AIC? I want to perform a forward-backward stepwise logistic regression and want to compare the results obtained by steps of significance and by steps of AIC. Thank you -- View this message in context: http://n4.nabb

Re: [R] step and glmer

Thank you for your rapid answer! -- View this message in context: http://n4.nabble.com/step-and-glmer-tp1474390p1474580.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/lis

[R] step and glmer

Is it possible to use the step() function with a glmer() as an object? I obtain the following error message when I try to do it: "Error in x$terms : $ operator not defined for this S4 class". I perform the glmer correctly but I can't do the step. Thank you so much. -- View this message in conte