I want to use the code below this message to make stacked bar plot, my
question is :
I want the stacked bar and its legend following the order as tr from
left to right like the following:
"100.0.250ng_CellLine_0" "75.25.250ng_CellLine_0"
"50.50.250ng_CellLine_0" "10.90.250ng_CellLine_0"
"1.99.25
I want the stacked bar and its legend following the order as tr from
left to right like the following:
"100.0.250ng_CellLine_0" "75.25.250ng_CellLine_0"
"50.50.250ng_CellLine_0" "10.90.250ng_CellLine_0"
"1.99.250ng_CellLine_0" "0.100.250ng_CellLine_0"
"100.0.500ng_CellLine_0" "75.25.500ng_CellLine
+
>scale_fill_manual(breaks = df$gene, values = df$cols) +
>theme(axis.text.x = element_text(angle = 45, hjust = 1,size = 4))
>
>
> But this places "Others" at the top of each bar.
> To move it to the bottom, instead of the code that creates 'g'
Is there possible to generate a barplot in the following link using ggplot?
https://photos.app.goo.gl/E3MC461dKaTZfHza9
here is what I did
library(ggplot2)
df <- read.csv(text=
"trt,gene,freq,cols
M6,ALDH16A1,100.000,red
M6,Others,0.000,lightgrey
M12,ALDH16A1,64.6638015,red
M12,GBE1,2.0
I have a question about using ggplot.
Is there possible to generate a barplot like the attached file using ggplot?
Thank you,
Aimin
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PLEASE
The attached is the heatmap.
Thank you,
Aimin
On Wed, Feb 27, 2019 at 10:51 PM Aimin Yan wrote:
> I have a question about assigning color based on the value of a matrix
>
> The following is my matrix.
>
> d
> lateRT earlyRT NAD ciLAD
>
I have a question about assigning color based on the value of a matrix
The following is my matrix.
d
lateRT earlyRT NAD ciLAD
lateRT 1.0 0.00 0.006224017 0.001260241
earlyRT 0.0 1.00 0.001425649 0.007418436
NAD 0.006224017 0.001
he fourth label up and to the right 1mm in each
> direction ...
>
>
> x <- t$x
> y <- t$y
>
> x[4] <- t$x[4] + unit(1, "mm")
> y[4] <- t$y[4] + unit(1, "mm")
>
> grid.edit("quantities.grob", x=x, y=y)
>
>
> ... is tha
t$x
t$y
# Try to change the x and y value of the 4th label "2"
grid.edit("quantities.grob",x[[4]]=unit(-11.8262244206465, "native"))
grid.edit("quantities.grob",y[[4]]=unit(-5.19720701058398, "native"))
Error: unexpected '=
0781461293, "native"),
unit(25.7349463488991, "native"),
unit(-22.7610031110325, "native"),
unit(14.5001560838519, "native")))
H
I am using eulerr to get venn.
My code is like:
fit1 <- euler(c("ciLAD" = 785, "LAD" = 565, "nonXL_MEF" = 167,
"ciLAD&LAD" = 3, "ciLAD&nonXL_MEF" = 101,
"LAD&nonXL_MEF" = 541,
"ciLAD&LAD&nonXL_MEF" = 2),shape = "ellipse")
plot(fit1,quantities = TRUE,fill =
I am using eulerr to get venn.
My code is like:
fit1 <- euler(c("ciLAD" = 785, "LAD" = 565, "nonXL_MEF" = 167,
"ciLAD&LAD" = 3, "ciLAD&nonXL_MEF" = 101,
"LAD&nonXL_MEF" = 541,
"ciLAD&LAD&nonXL_MEF" = 2),shape = "ellipse")
plot(fit1,quantities = TRUE,fill =
I have a data set like this:
> head(FormatedData)
ID Target Actual Date Time
1 2030 0 -57.0 12/20/08 17:03:00
2 2030 90 90.0 12/20/08 18:41:00
3 2030 45 43.8 12/21/08 14:36:00
4 2030 0 -23.8 12/21/08 19:30:00
5 2030 90 90.2 12/21/08 21:48:00
6 2030 45
In linux, when I start R,
I get some message like this:
Error:unexpected '/' in '"/"
Does anyone know why?
AMY
Thanks,
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Does anyone know the maximum dimension that svm can deal with in R?
I am working on support vector regression.
My data set is 1721*41030
1721 samples
41030 predictors
Some information about my machine:
cat /proc/cpuinfo
processor : 0
vendor_id : GenuineIntel
cpu family : 15
your help
>>thanks
>
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>PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
>and provide commented, minimal, self-contai
I am trying someone's example to build a R package,
but I get some errors, Can someone help me to figure it out?
thanks,
* using log directory '/home/aiminy/myrpackages/roots.Rcheck'
* using R version 2.6.1 (2007-11-26)
* checking for file 'roots/DESCRIPTION' ... OK
* this is package 'roots' ver
I want to label each bar on the top of bars when using barplot.
anyone know how to do this?
thanks
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I am trying to use scatterplot function in CAR like the following:
scatterplot(X~Y)
I want to label X points and Y ponits using the different color.
Any idea for this?
Aimin
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I try to make a xyplot like the following:
xyplot(y1+y2~id|groups, ...)
I also want to calculate cor(y1,y2) in each group, print it on each panel.
Does anyone know how to write panel function for this?
Thanks,
Aimin
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Hello,
I have a question about splitting label in regression tree.
for example, by using the following command
plot(m.regression.tree.pr,uniform=T,margin=0.05,branch=0.7,compress=F)
text(m.regression.tree.pr,pretty=0)
I get a tree with one label in some splitting node like this
bcu<0.004969
Now
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