Re: [R] Format printing with R

2022-11-21 Thread Ivan Krylov
On Tue, 22 Nov 2022 08:15:57 +0800 "Steven T. Yen" wrote: > Thanks to all, but no, signif() did not work: It worked, just didn't do what you wanted it to do. I think you want round(), not signif(). Some of your numbers (45.3185794) will be rounded to 4 significant digits and others (0.096) w

Re: [R] Hidden Problems with Clustering Algorithms

2022-11-21 Thread Bert Gunter
Most clustering algorithms are just heuristic and exploratory, well known to be subject to the sorts of issues that you are concerned with. There are no universal fixes ... just tradeoffs. You need to choose that which is most appropriate for your situation and data,. Bert On Mon, Nov 21, 2022, 1

[R] Hidden Problems with Clustering Algorithms

2022-11-21 Thread Leonard Mada via R-help
Dear R-Users, Hidden Problems with Clustering Algorithms I stumbled recently upon a presentation about hierarchical clustering. Unfortunately, it contains a hidden problem of clustering algorithms. The problem is deeper and I think that it warrants a closer inspection by the statistical commu

Re: [R] Format printing with R

2022-11-21 Thread Bert Gunter
??? > vals <- signif(cbind(c(.123,.0123), c(1.23,.00123)), digits = 2) > print(vals) [,1] [,2] [1,] 0.120 1.2000 [2,] 0.012 0.0012 2 *significant* digits, but enough digits to right of decimal point to **allow** the two significant digits to appear and have all numbers in a column line up

Re: [R] Format printing with R

2022-11-21 Thread Jeff Newmiller
Andrew's example works for him and for me. If you want help, provide the output of dput(head(Mean)) dput(head(Std.dev)) On November 21, 2022 4:15:57 PM PST, "Steven T. Yen" wrote: >Thanks to all, but no, signif() did not work: > >> print(signif(cbind(Mean,Std.dev),digits=2)) >    Mean Std.

Re: [R] Format printing with R

2022-11-21 Thread Steven T. Yen
Thanks to all, but no, signif() did not work: > print(signif(cbind(Mean,Std.dev),digits=2))     Mean Std.dev  [1,]  0.310    0.46  [2,]  0.190    0.39  [3,] 45.000   16.00  [4,]  0.510    0.50  [5,]  0.490    0.50  [6,]  0.700    0.46 On 11/22/2022 5:41 AM, Andrew Simmons wrote: For print()

Re: [R] Format printing with R

2022-11-21 Thread dulcalma dulcalma
Hi All How about data.frame or zapsmall. Apologies for the small set but it seems to show the point Mean = c(0.311,0.188,45.319) sdd = c(0.36,0.39,16.31) data.frame(Mean = Mean, St.dev = sdd) Mean St.dev 1 0.311 0.36 2 0.188 0.39 3 45.319 16.31 print(data.frame(Mean = Mean, St.dev =

Re: [R] make install libgfortran.so.5: cannot open shared object file: No such file or directory; conftest.c:1:10: fatal error: jni.h: No such file or directory

2022-11-21 Thread Rob Kudyba
> В Mon, 21 Nov 2022 10:19:36 -0500 > Rob Kudyba пишет: > > > I edited the last line to be: > > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/path/to/gcc-11.2/lib64 then > > make install errored with: > > /path/to/R-4.2.2/bin/exec/R: error while loading shared libraries: > > libpcre2-8.so.0: cannot ope

Re: [R] make install libgfortran.so.5: cannot open shared object file: No such file or directory; conftest.c:1:10: fatal error: jni.h: No such file or directory

2022-11-21 Thread Rob Kudyba
On Sun, Nov 20, 2022 at 2:26 PM Ivan Krylov wrote: > On Sun, 20 Nov 2022 14:03:34 -0500 > Rob Kudyba wrote: > > > /path/to/gcc-11.2/lib is definitely in LD_LIBRARY_PATH when loading > > the GCC 11.2 module. > > > > If using the /path/to/R-4.2.2/etc/ldpaths where would I put the > > correct path?

Re: [R] Format printing with R

2022-11-21 Thread Andrew Simmons
For print(), digits is the minimal number of significant digits. In your case, rounding the first column to the 3rd decimal place gives at least 2 sigfigs and rounding the second column to the 2nd decimal place. If you want to print all numbers to two significant digits, regardless of what other n

Re: [R] Format printing with R

2022-11-21 Thread Jeff Newmiller
For better reproducibility, use dput to share data. A matrix and a data frame look similar, but they can act differently. On November 21, 2022 1:09:55 PM PST, Jim Lemon wrote: >Hi Steven, >I thought that the problem might be in the two large numbers, but >using a subset (I didn't want to edit ou

Re: [R] Format printing with R

2022-11-21 Thread Jim Lemon
Hi Steven, I thought that the problem might be in the two large numbers, but using a subset (I didn't want to edit out all the line numbers), I get what I expected: sydf<-read.table(text="Mean Std.dev [1,] 0.3107966 0.462820 [2,] 0.1880302 0.390736 [3,] 45.3185794 16.313635 [4,] 0.50663

[R] Format printing with R

2022-11-21 Thread Steven T. Yen via R-help
Hi, I have two variables with 86 observations each. Below I print with the print command with digit=2. But, I am getting three decimal places for my first variable and two for the second. Please help. Thanks. > cbind(Mean,Std.dev)     Mean   Std.dev  [1,]  0.3107966  0.462820  [2,]  0.1

Re: [R] IGCI implemented in R package ?

2022-11-21 Thread Eric Berger
Hi Sacha, My search turned up the Causal Discovery Toolbox which includes IGCI among 10 (or more) methods. This site includes both Python and R resources and seems to be quite rich - hopefully you will find something useful. Here's the link: https://fentechsolutions.github.io/CausalDiscoveryToolbox

[R] IGCI implemented in R package ?

2022-11-21 Thread varin sacha via R-help
Dear R experts, Google is very often my friend but this time it does not ! Are you aware of an R package in which the directed causal discovery algorithm called the Information Geometric Causal Inference (IGCI) of (Daniusis et al., 2010) is implemented ? Best, Sacha Envoyé de mon iPhone _

Re: [R] linux, emacs, R on iPhone/iPad

2022-11-21 Thread Erin Hodgess
Hi Dr. H: I tried this a couple of months ago on my iPad. Everything would load, but when I tried to run R, it would never open. However, my iPad is about 6 years old. Do you need a particular model for the iPad, please? Thanks Erin On Mon, Nov 21, 2022 at 11:03 AM Richard M. Heiberger wrot

[R] linux, emacs, R on iPhone/iPad

2022-11-21 Thread Richard M. Heiberger
I discovered that the "iSH shell" is available for the iPhone/iPad from the Applications app. this is Alpine linux Once iSH is loaded from the App store, then open it to a shell and download apk add emacs apk add R emacs works well for writing files and sending them to a bigger computer by aird

Re: [R] make install libgfortran.so.5: cannot open shared object file: No such file or directory; conftest.c:1:10: fatal error: jni.h: No such file or directory

2022-11-21 Thread Ivan Krylov
В Mon, 21 Nov 2022 10:19:36 -0500 Rob Kudyba пишет: > I edited the last line to be: > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/path/to/gcc-11.2/lib64 then > make install errored with: > /path/to/R-4.2.2/bin/exec/R: error while loading shared libraries: > libpcre2-8.so.0: cannot open shared object