Re: [R] A question related to extracting peptides from indels for mouse

Probably not here. Better here: https://bioconductor.org/help/ -- Bert On Thu, Nov 17, 2022 at 6:43 AM Li, Aiguo (NIH/NCI) [E] via R-help < r-help@r-project.org> wrote: > Dear all, > > I need to extract peptides from a long list of indels of mouse for > neoantigen analysis. Does anyone know a t

[R] A question related to extracting peptides from indels for mouse

Dear all, I need to extract peptides from a long list of indels of mouse for neoantigen analysis. Does anyone know a tool that will do it? Thanks, Anna [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCR

Re: [R] Rare behaviour for nlme::reStruct example and question about ?lmeObject

Thank you Martin, Regarding my question about `terms`, I meant the `terms` component of the `lme` output. For example, for fm1 <- lme(distance ~ age, data = Orthodont) I can see through str(fm1), the next: $ terms   :Classes 'terms', 'formula'  language distance ~ age   .. ..- attr(*, "

Re: [R] Rare behaviour for nlme::reStruct example and question about ?lmeObject

> Martin Maechler > on Thu, 17 Nov 2022 09:16:04 +0100 writes: > Andrew Simmons > on Tue, 15 Nov 2022 18:01:55 -0500 writes: >> This seems to be a bug. I tried creating this function in the global >> environment: >> str.pdMat <- function (object, ...) >>

Re: [R] Rare behaviour for nlme::reStruct example and question about ?lmeObject

> Andrew Simmons > on Tue, 15 Nov 2022 18:01:55 -0500 writes: > This seems to be a bug. I tried creating this function in the global > environment: > str.pdMat <- function (object, ...) > { > if (nlme::isInitialized(object)) { > NextMethod() > }