Thanks Jim
This seems to be strightforward and quite simple. I considered addtable2plot
but was not sure how to make propper data frame from the result.
Regards
Petr
> -Original Message-
> From: Jim Lemon
> Sent: Friday, September 17, 2021 2:31 AM
> To: PIKAL Petr ; r-help mailing list
In your case, yes, there is a negative impact to formatting the code like:
x <- `padding<-`(right(x), ...)
and it comes from using 'substitute' without specifying an environment / /
list. It's my biggest problem with the tidyverse packages, the use of
non-standard evaluation. 'substitute' was ori
On 09/16/2021 09:26 PM, H wrote:
> On 09/16/2021 09:00 PM, Jim Lemon wrote:
>> Okay, that was just my reading of the help page. I hope that I haven't
>> added to the confusion.
>>
>> Jim
>>
>> On Fri, Sep 17, 2021 at 10:50 AM H wrote:
>>> On 09/15/2021 09:40 PM, Jim Lemon wrote:
Oops, your pl
On 09/16/2021 09:00 PM, Jim Lemon wrote:
> Okay, that was just my reading of the help page. I hope that I haven't
> added to the confusion.
>
> Jim
>
> On Fri, Sep 17, 2021 at 10:50 AM H wrote:
>> On 09/15/2021 09:40 PM, Jim Lemon wrote:
>>> Oops, your plot
>>>
>>> On Thu, Sep 16, 2021 at 11:39 AM
Okay, that was just my reading of the help page. I hope that I haven't
added to the confusion.
Jim
On Fri, Sep 17, 2021 at 10:50 AM H wrote:
>
> On 09/15/2021 09:40 PM, Jim Lemon wrote:
> > Oops, your plot
> >
> > On Thu, Sep 16, 2021 at 11:39 AM Jim Lemon wrote:
> >> Hi H,
> >> Looking at your
On 09/15/2021 09:40 PM, Jim Lemon wrote:
> Oops, your plot
>
> On Thu, Sep 16, 2021 at 11:39 AM Jim Lemon wrote:
>> Hi H,
>> Looking at your example and the help page, it looks to me as though
>> the plot is consistent with the "A" matrix:
>>
>> Oz
>> Rain Nice
>> Rain 0.25 0.75
>> Nice 0.60
Hi Petr,
The hard part is the names for the data frame that addtable2plot requires:
set.seed(753)
res <- shapiro.test(rnorm(100))
library(plotrix)
plot(0,0,type="n",axes=FALSE)
addtable2plot(0,0,data.frame(element=names(res)[1:2],
value=round(as.numeric(res[1:2]),3)),xjust=0.5,
title=res$metho
Dear R users,
I generated a boxplots in combination of dotplots using the R code below for
the attached test file.
boxplot(value~score, data = test, outpch = NA, xlab="",ylab="",xaxt='n',
cex.lab=1.2, cex.axis=1.2, main="Correlation of SCNV score and SCNV
value ")
mtext(side=2, "SCNV val
Hi Kai,
I don't know about ggplot, but it may be easier to do it before plotting:
set.seed(753)
testdat<-matrix(sample(1:10,9),nrow=3)
# first plot the raw matrix
barplot(testdat)
# then plot the matrix ordered by column sums
barplot(testdat[,order(colSums(testdat))])
Jim
On Fri, Sep 17, 2021 at
Hello List,
I can order the general bar chart based on frequency, using ggplot2 with the
code : aes((reorder(Var1, Freq)), Freq))
I don't know how to order stacked bar plot by total frequency
Can you give me some of example?
Thank you
Kai
[[alternative HTML version deleted]]
___
Completely true. Thank you for your help
On Thu, Sep 16, 2021 at 12:37 PM Rui Barradas wrote:
> Hello,
>
> You are trying to access elements that do not exist, see the example below:
>
>
> x <- 1:3
> x[5] # beyond the last element
> #[1] NA
>
> dim(df)
> #[1] 145092258
>
> df[145092
Hello,
You are trying to access elements that do not exist, see the example below:
x <- 1:3
x[5] # beyond the last element
#[1] NA
dim(df)
#[1] 145092258
df[14509227,] # beyond nrow(df) by 2
Hope this helps,
Rui Barradas
Às 15:12 de 16/09/21, Ana Marija escreveu:
Hi All,
I
Agree with Bert per your stated problem, but want to point out that you don't
have control over the locale in which your users will be trying to display the
encoded strings in your data. I am no expert in this, but you will need to
become one in order to understand your own problem and any solut
This should not be posted here. Post on the R-package-devel list instead.
Bert Gunter
"The trouble with having an open mind is that people keep coming along
and sticking things into it."
-- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )
On Thu, Sep 16, 2021 at 9:13 AM Marc Giron
Hello everyone,
I am a little bit stucked on the problem to include a database with
utf-8 string in a package. When I submit it to CRAN, it reports NOTES
for several Unix system and I try to find a solution (if it exists) to
not have these NOTES.
The database has references and some names have
This is pretty kludgy but ...
res.p <- capture.output(res) # creates a list of what goes to the screen
res.pl <- '' " # initialize res.pl
res.nul <- sapply(res.p,function(x.c) res.pl <<-
paste(res.pl,res.c,sep='\n')) # adds the list items separated by a line
feed
text(x, y, res.pl, pos=4,
This is pretty kludgy but ...
res.p <-capture.output(x.t)
res.pl <- ''
res.nul <- sapply(res.p,function(x.c) res.pl <<-
paste(res.pl,res.c,sep='\n'))
text(x,y,rel.pl,pos=4,cex=mycex)
This will replicate the print object for the t.test that goes to the
screen so you can add it to a plot. One n
Thanks,
I will try to elaborate on it.
Best regards.
Petr
> -Original Message-
> From: R-help On Behalf Of Kimmo Elo
> Sent: Thursday, September 16, 2021 4:45 PM
> To: r-help@r-project.org
> Subject: Re: [R] adding results to plot
>
> Hi!
>
> Maybe with this:
>
> text(x=0.6, y=1.2, p
Hallo
Thanks, I will try wat option is better if yours or Kimmo's
Best regards
Petr
> -Original Message-
> From: Bert Gunter
> Sent: Thursday, September 16, 2021 5:00 PM
> To: PIKAL Petr
> Cc: r-help
> Subject: Re: [R] adding results to plot
>
> I was wrong. text() will attempt to co
I was wrong. text() will attempt to coerce to character. This may be
informative:
> as.character(res)
[1] "c(W = 0.992709285275917)""0.869917232073854"
[3] "Shapiro-Wilk normality test" "rnorm(100)"
plot(0:1, 0:1); text(0,seq(.1,.9,.2), labels = res, pos = 4)
Bert
Bert Gunter
"The trouble
Hi Grzegorz,
this is great! it works for me.
Thank you,
Kai
On Wednesday, September 15, 2021, 11:09:20 PM PDT, Grzegorz Smoliński
wrote:
Hi,
of course you can. This should work:
ggplot(s8_plot, aes(fill=GTresult, y=cases, x=gc_label)) +
geom_bar(position="stack", stat="identity")) +
t
Hi!
Maybe with this:
text(x=0.6, y=1.2, paste0(capture.output(res), collapse="\n"), adj=0)
HTH,
Kimmo
to, 2021-09-16 kello 14:12 +, PIKAL Petr kirjoitti:
> Virhe vahvistaessa allekirjoitusta: Virhe tulkittaessa
> Dear all
>
> I know I have seen the answer somewhere but I am not able
res is a list of class "htest" . You can only add text strings to a
plot via text(). I don't know what ggplot does.
Bert Gunter
"The trouble with having an open mind is that people keep coming along
and sticking things into it."
-- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )
You are getting this because you asked for the contents of a row that
is beyond the number of rows in your data frame.
On Thu, Sep 16, 2021 at 5:12 PM Ana Marija wrote:
>
> Hi All,
>
> I have lines in file that look like this:
>
> > df[14509227,]
> SNP A1 A2 freq b se p N
> 1: NA
Hi
You should consult either complete.cases function or to remove only rows in
which are only NAs you could use something like (untested)
df[!(colSums(is.na(df))==8),]
Cheers
Petr
> -Original Message-
> From: R-help On Behalf Of Ana Marija
> Sent: Thursday, September 16, 2021 4:12 PM
Dear all
I know I have seen the answer somewhere but I am not able to find it. Please
help
> plot(1,1)
> res <- shapiro.test(rnorm(100))
> res
Shapiro-Wilk normality test
data: rnorm(100)
W = 0.98861, p-value = 0.5544
I would like to add whole res object to the plot.
I can do it one
Hi All,
I have lines in file that look like this:
> df[14509227,]
SNP A1 A2 freq b se p N
1: NA NA NA NA NA
data looks like this:
> head(df)
SNP A1 A2 freq b se p N
1: rs74337086 G A 0.0024460 0.1627 0.1231 0.1865 218792
2: rs76388980 G
27 matches
Mail list logo
