Re: [R] R does not start from (Debian) linux command line - error with doWithOneRestart() - segmentation fault

Dear Henrik, We upgraded R and rebooted the computer and the error went away. Hence I do not think we will get any strange results anymore. Still, I could be mistaken and I am still curious as to what happened to my R installation. Please find the answers inline below. On Thu, Apr 8, 2021 at 9:5

Re: [R] Unable to extract gene list from chromosome

On 4/8/21 3:42 PM, pooja sinha wrote: > Hi David, > > Sorry I forgot to attach the file. Now it's attached. Now when I go back and check the values of the setup variables after seeing an error on the last call, Error in .processResults(postRes, mart = mart, sep = sep, fullXmlQuery = fullXmlQ

Re: [R] Unable to extract gene list from chromosome

On 4/8/21 2:30 PM, pooja sinha wrote: Hi All, I am trying to extract gene list from chromosome number and position, for that I am using biomaRt in R but I am getting error messages as shown below. Also below is the code I am using for extraction. library("biomaRt") listMarts() ensembl <- useM

[R] Unable to extract gene list from chromosome

Hi All, I am trying to extract gene list from chromosome number and position, for that I am using biomaRt in R but I am getting error messages as shown below. Also below is the code I am using for extraction. library("biomaRt") listMarts() ensembl <- useMart("ensembl") datasets <- listDatasets(en

[R] Variance of the sample mean by bootstrapping

Hello, I'm studying bootstrapping. I devised a code that draw a sample of heights, and then compute the sample mean of those heights. I want to compute the variance of the sample mean by bootstrapping. I am comparing this with the "real" variance of the sample meanand with an "estimated" vari

Re: [R] R does not start from (Debian) linux command line - error with doWithOneRestart() - segmentation fault

Ashim, as Martin says, there's something really weird going on with your core R installation. This is definitely not expected, and I don't know think if I've every seen this reported before. Here are some questions/comments that might help you move forward and for others to pitch in: 1. How did

Re: [R] /usr/local/lib/R/site-library is not writable

I would actually go a step in the other direction: per project libraries. For example by adding a .Rprofile file to your project directory. This ensures that everybody working on a project uses the same version of the packages (even on different machines e.g. on shared folders). This can g