Re: [R] Surprising behavior and bugs in R 4.0.4

FYI, you do not have to provide a full link to the function "install.packages". Please install the package just by install.package("package name") Best, Jiefei On Sun, Mar 21, 2021 at 9:41 AM Jiefei Wang wrote: > Hi Miso, > > It looks like you have a corrupted package library, probably due to s

Re: [R] Surprising behavior and bugs in R 4.0.4

Hi Miso, It looks like you have a corrupted package library, probably due to some packages installed from an unofficial repository(e.g. GitHub). I will suggest first installing the package "spatstat"(This is the package that should define "markvario"), then try to install "Seurat" again and see if

Re: [R] R-help Digest, Vol 217, Issue 20

No, it is not distribution free. Independent random sampling is assumed. That is a non-trivial assumption, and one that is very often not true or not strictly true. John Maindonald email: john.maindon...@anu.edu.au On 21/03/2021, at 00:00, r-hel

Re: [R] Custom annotation vector in R tsmp package

Please note, per the posting guide linked below: "For questions about functions in standard packages distributed with R (see the FAQ Add-on packages in R ), ask questions on R-help. If the question relates to a *contributed packag

[R] Custom annotation vector in R tsmp package

I'd like to use a custom annotation vector (av) for a matrix profile (mp) produced using the tsmp package, but I am unsure how to amend said profile produced by e.g. the compute function. I note that the package provides some functions to do this for "standard" cases, such as av_complexity, av_har

Re: [R] Surprising behavior and bugs in R 4.0.4

I have no familiarity with these packages but I did a search in CRAN on api_create and found it is defined in the plotly package. I then confirmed that the seurat package does reference plotly. You might try installing the plotly package before trying to install seurat. HTH, Eric On Sat, Mar 20

Re: [R] Surprising behavior and bugs in R 4.0.4

Hi Miso, Have you tried to install Seurat from CRAN? What you were using is the GitHub version of the package and has been actively updating, so the problem might be from the package. Best, Jiefei On Sat, Mar 20, 2021 at 10:32 PM Miso Na wrote: > Dear helpers, > > Although I uninstalled and re

Re: [R] Surprising behavior and bugs in R 4.0.4

On 20/03/2021 1:04 a.m., Miso Na wrote: Dear helpers, Although I uninstalled and reinstalled R more than 3 times to delete the error in api_create, it did not work. The error is representing on the very first page on R consol. Error: could not find function "api_create" Why would you think t

[R] Surprising behavior and bugs in R 4.0.4

Dear helpers, Although I uninstalled and reinstalled R more than 3 times to delete the error in api_create, it did not work. The error is representing on the very first page on R consol. Error: could not find function "api_create" I guess this error makes impossible to install library 'SCMAP',

Re: [R] "exact" p-values

I am late to this discussion -- I read R-help as a once-a-day summary.  A few comments. 1. In the gene-discovery subfield of statistics (SNP studies, etc.)  there is a huge multiple-testing problem.  In defense, the field thinks in terms of thresholds like 1e-5 or 1e-10 rather than the .05 or