Re: [R] Troubles installing Rcmdr on Mac

2021-01-11 Thread Dr Eberhard W Lisse
John, what is wrong with installing Xcode’s command lime tools (not Xcode itself)? — Sent from Dr Lisse’s iPhone On 12 Jan 2021, 04:30 +0200, John Fox , wrote: > Dear Stephane, > > I've taken yet another look at this and have an additional suggestion > for your students to try: > > install.packa

Re: [R] Troubles installing Rcmdr on Mac

2021-01-11 Thread John Fox
Dear Stephane, I've taken yet another look at this and have an additional suggestion for your students to try: install.packages("Rcmdr", type="mac.binary") That should avoid any attempt to install Rcmdr package dependencies from source. I hope this helps, John On 2021-01-11 3:53

Re: [R] Troubles installing Rcmdr on Mac

2021-01-11 Thread John Fox
Dear Stephane and Eberhard, As an addendum to my previous response, I uninstalled the Rcmdr package and all of its direct and indirect dependencies and then reinstalled the package -- on a macOS 11.1 system running R 4.0.3 with all other packages up-to-date. I then reinstalled the Rcmdr and

Re: [R] Troubles installing Rcmdr on Mac

2021-01-11 Thread John Fox
Dear Stephane and Eberhard, It should not be necessary to install Xcode (which includes otools) to install and use the Rcmdr package on macOS because it shouldn't be necessary to install the CRAN packages required from source. I'm currently running the Rcmdr on two macOS 11.1 systems, with all

Re: [R] Showing error distributions in a point plot

2021-01-11 Thread phil
Yes, geom_violin does the trick. Thanks for your fast and useful reply, Bert. Philip On 2021-01-11 11:05, Bert Gunter wrote: Search for "violin plots" at rseek.org [1]. There is a whole package devoted to them, many packages provide them, and there is a geom_violin in ggplot2. Don't know if

Re: [R] Troubles installing Rcmdr on Mac

2021-01-11 Thread Dr Eberhard W Lisse
Use RStudio. But it can be that the command line tools are missing, which you (may) need to compile packages (from source).Ask one of them to open a terminal window and type the command ‘make —version’ without the ‘’) if that results in an error they need to enter ‘sudo xcode-select —install’ a

[R] Troubles installing Rcmdr on Mac

2021-01-11 Thread CHAMPELY STEPHANE
Dear colleagues, I try to help my (french) student since five days to install Rcmd for mac and they have (ALL of them, and I use windows so I am not very skilled for that task) the same problem. When they load Rcmd, some supplementary tools (in order to use the command "otool") are missing accor

Re: [R] Showing error distributions in a point plot

2021-01-11 Thread Bert Gunter
Search for "violin plots" at rseek.org. There is a whole package devoted to them, many packages provide them, and there is a geom_violin in ggplot2. Don't know if this satisfies your aesthetic sensibilities, of course. That's for you to decide. Cheers, Bert Bert Gunter "The trouble with havin

[R] Showing error distributions in a point plot

2021-01-11 Thread phil
I have a point plot where the estimated points have normally distributed errors and I want to plot not just the estimated points, but also an indication of the range of uncertainty in each case. The usual way of doing this, I believe, is with geom_pointrange, as shown in my reprex. However, thi

Re: [R] How to avoid ggplot clipping the x axis [damn, replaces previous Email]

2021-01-11 Thread Chris Evans
Perfect. Can't believe I failed to find that! Thanks, as ever, Rui - Original Message - > From: "Rui Barradas" > To: "Chris Evans" , R-help@r-project.org > Sent: Sunday, 10 January, 2021 18:10:16 > Subject: Re: [R] How to avoid ggplot clipping the x axis [damn, replaces > previous Emai

Re: [R] log of small values in R

2021-01-11 Thread David Winsemius
> On Jan 10, 2021, at 11:38 PM, Jeff Newmiller wrote: > > ?log1p > > On January 10, 2021 12:53:14 AM PST, Shaami wrote: >> Dear FriendsI am facing the problem of log values in R. The >> log(1-0.9) is giving -Inf while log(1e-18) gives finite >> answer. Any suggestion