Re: [R] Installing bioconduction packages in connection with loading an R package

2020-10-11 Thread Bert Gunter
You would do better posting this on r-package-devel rather than here, I believe. Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Sun, Oct 11, 2020 at 11:51 AM S

Re: [R] Installing bioconduction packages in connection with loading an R package

2020-10-11 Thread Jeff Newmiller
This sounds like your package belongs in the bioconductor repository rather than in CRAN. Referencing bioc packages only in Suggests might make it appropriate for CRAN. On October 11, 2020 11:51:29 AM PDT, "Søren Højsgaard" wrote: >Dear all, > >My gRbase package imports functionality from the

[R] Installing bioconduction packages in connection with loading an R package

2020-10-11 Thread Søren Højsgaard
Dear all, My gRbase package imports functionality from the bioconductor packages graph, Rgraphviz and RBGL. To make installation of gRbase easy, I would like to have these bioconductor packages installed in connection with installation of gRbase, but to do so the user must use setRepositories(

Re: [R] Installing a Package

2020-10-11 Thread Jeff Newmiller
If you are referring to [1] which has been archived on CRAN because the maintainer did not, well, maintain it for the last 9 years, then don't be surprised if things to go wrong in either the installation and/or use of that package. As a beginner you should probably rely on some other package to

Re: [R] Installing a Package

2020-10-11 Thread Rui Barradas
Hello, What OS are you running? If it's Windows you will need Rtools [1] to install a source package. Otherwise the following usually works. 1. Download the tar.gz package file (say, package_version.tar.gz) to your disk. 2. Go to the directory where this file is. 3.a. From within RStudio ru

[R] Installing a Package

2020-10-11 Thread Faheem Jan via R-help
Hello, I am working in the nonparametric functional data analysis, i stack in a simple problem is that i am  going to install a package in the name of nfda which is not present in the  R Cran, know how i am going to install this package in R studio from archives or some thing else. please gui

Re: [R] Help using the exclude option in the neuralnet package

2020-10-11 Thread Sebastian Mueller
Hi Dan, the easiest way to declare `exclude` and `constant.weights` is as a vector of indices. You can determine the index of the neuron as follows: The layers are arranged in sequence, with the bias neuron being the first in each layer. So in a neural net with 6 input neurons and a layer of