Re: [R] COVID-19 datasets...

Another option is https://www.ecdc.europa.eu/en/publications-data/download-todays-data-geographic-distribution-covid-19-cases-worldwide Together with instruments from https://www.repidemicsconsortium.org/ Cheers Petr Here is some simple code library(EpiEstim) library(ggplot2) library(lubridat

Re: [R] if else statement

Your ifelse expression looks fine. What goes wrong with it? On Tue, 5 May 2020 at 05:16, Ana Marija wrote: > > Hello, > > I have a data frame like this: > > > head(b) >FID IID FLASER PLASER > 1: fam1000 G1000 1 1 > 2: fam1001 G1001 1 1 > 3: fam1003 G1003 1

Re: [R] Problems installing rgl (3D graphics package). Error messages "... not available, " "non-zero exit status" and so on

On 04/05/2020 7:46 p.m., Byron Dom via R-help wrote: I want to install the 3D graphics rgl. I'm running R version 3.2.3 on Windows version "10.0.18362 N/A Build 18362". That's a four year old version of R. You'll likely have to find packages of a similar age to be able to get it to work, or u

[R] Problems installing rgl (3D graphics package). Error messages "... not available, " "non-zero exit status" and so on

I want to install the 3D graphics rgl.  I'm running R version 3.2.3 on Windows version "10.0.18362 N/A Build 18362". I've been using R for about 15 years but only as a casual user. I have installed two packages in the past, but the last was several years ago. When I issued the command "install.pac

Re: [R] COVID-19 datasets...

I don't know if this is useful of not. But here's some dis-aggregated US data. It's about 10 days old, and I need to improve the dis-aggregation algorithm. -- age <- 0:80 rel.mort.rate <- c (0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 5.97119198173175e-14, 1.49

Re: [R] COVID-19 datasets...

Yes, you're right. Note that stack exchange is 10x more likely to flag my post as off-topic, and I was looking for *interesting* applications of R. There's only so many times one can use Fisher's iris data... On Tue, May 5, 2020 at 8:42 AM Bert Gunter wrote: > > Suggestion: Please stay on topic

Re: [R] COVID-19 datasets...

Suggestion: Please stay on topic. This list is R-Help, not about scientific discussions or even what statistical procedures might be used for specific research questions. Perhaps https://stats.stackexchange.com/ for the latter. Bert Gunter "The trouble with having an open mind is that people k

Re: [R] why outer function is failing?

Re-reading your question it appears you want the number of permutations for each pair, e.g. the number of permutations of the numbers 1 - 3 taken 1 time, etc. If I am correct, this should get you want you want: ct <- outer(y, x, "^") ct [,1] [,2] [,3] [,4] [,5][,6] [1,]39 27

Re: [R] COVID-19 datasets...

sorry, blood acidity probably wasn't the best choice of words __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html a

Re: [R] COVID-19 datasets...

While we're on this topic... I was interested in testing hypotheses (plural) that acid base chemistry (blood H+/HCO3/PCO2) or closely-related metabolic processes could influence the rate of viral replication, possibly by having some sort of effect on the acidity of phagocytes, vesicles or other ce

Re: [R] why outer function is failing?

The outer function only calls FUN once with two vectors representing all combinations of the inputs. If rolldie is not vectorized then it will have trouble with this input. Why aren't you using sample? On May 4, 2020 11:51:03 AM PDT, Yousri Fanous wrote: >Hello > >From outer help page: >outer

Re: [R] why outer function is failing?

The FUN= argument must be a vectorized function (see the documentation, ?outer), but the function rolldie takes only scalar values as arguments: rolldie(x, y) Error in rep("X", times) : invalid 'times' argument In addition: Warning messages: 1: In 1:times : numerical expression has 6 elements: onl

Re: [R] COVID-19 datasets...

Thanks, i will take a look Bernard Sent from my iPhone so please excuse the spelling!" > On May 4, 2020, at 2:49 PM, James Spottiswoode wrote: > > Sure. COVID-19 Data Repository by the Center for Systems Science and > Engineering (CSSE) at Johns Hopkins University is available here: > > http

[R] why outer function is failing?

Hello >From outer help page: outer takes two vectors and a function (that itself takes two arguments) and builds a matrix

Re: [R] COVID-19 datasets...

On Mon, 4 May 2020 at 11:32, Bernard McGarvey wrote: > Just curious does anyone know of a website that has data available in a > format that R can download and analyze? > https://hd1-units.herokuapp.com/covid has a days parameter one can adjust to go back in time and a suffix parameter to obtain

Re: [R] COVID-19 datasets...

This works very well https://github.com/covid19datahub/COVID19 Cheers, Ben On Mon, May 4, 2020 at 2:32 PM Bernard McGarvey < mcgarvey.bern...@comcast.net> wrote: > Just curious does anyone know of a website that has data available in a > format that R can download and analyze? > > Thanks > > > B

Re: [R] if else statement

Hello, Here is a way, using logical indices. b$pheno <- NA b$pheno[b$FLASER == 1 & b$PLASER == 1] <- 1 b$pheno[b$FLASER == 2 | b$PLASER == 2] <- 2 Hope this helps, Rui Barradas Às 18:15 de 04/05/20, Ana Marija escreveu: Hello, I have a data frame like this: head(b) FID IID FLA

[R] COVID-19 datasets...

Just curious does anyone know of a website that has data available in a format that R can download and analyze?   Thanks Bernard McGarvey Director, Fort Myers Beach Lions Foundation, Inc. Retired (Lilly Engineering Fellow). __ R-help@r-project.org

Re: [R] if else statement

Thank you for the tip about table function, it seems correct: > table(b$FLASER, b$PLASER, exclude = NULL) 1 2 1836 6916 2 14 708 0 45 28 > table(b$pheno,exclude = NULL) 12 836 828 34 On Mon, May 4, 2020 at 12:45 PM Jeff Newmiller wrote: > T

Re: [R] if else statement

To expand on Patrick's response... You can use the expand.grid function to generate a test table containing all combinations. However, we would not be in a position to verify that the results you get when you apply your logic to the test table are what you want... you know the requirements much

Re: [R] if else statement

"I tried this but I am not sure if this is correct:" Does it provide the expected result for all possible combinations of 1/2/NA for both variables? On Mon, May 4, 2020 at 1:16 PM Ana Marija wrote: > Hello, > > I have a data frame like this: > > > head(b) >FID IID FLASER PLASER > 1: f

[R] if else statement

Hello, I have a data frame like this: > head(b) FID IID FLASER PLASER 1: fam1000 G1000 1 1 2: fam1001 G1001 1 1 3: fam1003 G1003 1 2 4: fam1005 G1005 1 1 5: fam1009 G1009 NA 2 6: fam1052 G1052 1 1 ... > unique(b$PLASER) [1] 1

Re: [R] stats:: spline's method could not be monoH.FC

> Martin Maechler > on Mon, 4 May 2020 16:25:02 +0200 writes: > Abby Spurdle > on Sun, 3 May 2020 16:15:17 +1200 writes: >>> and just today a colleague asked me about spline interpolation >>> with general 2nd derivative boundary conditions >>> s''(x_1) = s2_1

Re: [R] PCRE configure problem with R-4.0.0

On Mon, May 4, 2020 at 3:51 AM Ivan Krylov wrote: > > First of all, you mentioned Linux Mint, so you might get better advice > on R-SIG-Debian mailing list. > > On Mon, 4 May 2020 16:15:42 +1200 > Patrick Connolly wrote: > > >There are quite a lot of packages in the repository for Linux Mint > >1

Re: [R] stats:: spline's method could not be monoH.FC

> Abby Spurdle > on Sun, 3 May 2020 16:15:17 +1200 writes: >> and just today a colleague asked me about spline interpolation >> with general 2nd derivative boundary conditions >> s''(x_1) = s2_1, s''(x_n) = s2_2 actually I was wrong... I *read* it as the above, but what

Re: [R] 'closure' (was "stats:: spline's method could not be monoH.FC")

Just about this one some important term 'closure', hence I'm modifying the subject. Note we came here from my 2nd reason why I had added 'monoH.FC' feature only for splinefun() and not for spline() : - splinefun() is using's R feature of "(non-trivial) closure", i.e, it returns a *function*

Re: [R] PCRE configure problem with R-4.0.0

First of all, you mentioned Linux Mint, so you might get better advice on R-SIG-Debian mailing list. On Mon, 4 May 2020 16:15:42 +1200 Patrick Connolly wrote: >There are quite a lot of packages in the repository for Linux Mint >17.2 with 'pcre' in the name and these are installed: >Apparantly t