Re: [R] Message produced under R 3.6.0.

2019-04-29 Thread Duncan Murdoch
On 29/04/2019 9:44 p.m., Rolf Turner wrote: On 30/04/19 1:31 PM, Duncan Murdoch wrote: On 29/04/2019 9:25 p.m., Duncan Murdoch wrote: On 29/04/2019 8:43 p.m., Rolf Turner wrote: On 30/04/19 12:19 PM, Jeff Newmiller wrote: Since you now have this indirect dependency, you should make sure y

Re: [R] Message produced under R 3.6.0.

2019-04-29 Thread Rolf Turner
On 30/04/19 1:31 PM, Duncan Murdoch wrote: On 29/04/2019 9:25 p.m., Duncan Murdoch wrote: On 29/04/2019 8:43 p.m., Rolf Turner wrote: On 30/04/19 12:19 PM, Jeff Newmiller wrote: Since you now have this indirect dependency, you should make sure you have updated this gaggle of packages. I h

Re: [R] Message produced under R 3.6.0.

2019-04-29 Thread Duncan Murdoch
On 29/04/2019 9:25 p.m., Duncan Murdoch wrote: On 29/04/2019 8:43 p.m., Rolf Turner wrote: On 30/04/19 12:19 PM, Jeff Newmiller wrote: Since you now have this indirect dependency, you should make sure you have updated this gaggle of packages. I have found that the dependencies do not necessar

Re: [R] Message produced under R 3.6.0.

2019-04-29 Thread Duncan Murdoch
On 29/04/2019 8:43 p.m., Rolf Turner wrote: On 30/04/19 12:19 PM, Jeff Newmiller wrote: Since you now have this indirect dependency, you should make sure you have updated this gaggle of packages. I have found that the dependencies do not necessarily update when I update the package that relies

Re: [R] Message produced under R 3.6.0.

2019-04-29 Thread Rolf Turner
On 30/04/19 12:01 PM, Marc Schwartz wrote: Hi Guys, I suspect that this entry from news() for 3.6.0 is relevant: "When loading namespaces, S3 method registrations which overwrite previous registrations are now noted by default (using packageStartupMessage())." Always a good idea to read th

Re: [R] Message produced under R 3.6.0.

2019-04-29 Thread Rolf Turner
On 30/04/19 12:19 PM, Jeff Newmiller wrote: Since you now have this indirect dependency, you should make sure you have updated this gaggle of packages. I have found that the dependencies do not necessarily update when I update the package that relies on them. It can take a few passes of readi

Re: [R] Message produced under R 3.6.0.

2019-04-29 Thread Jeff Newmiller
Since you now have this indirect dependency, you should make sure you have updated this gaggle of packages. I have found that the dependencies do not necessarily update when I update the package that relies on them. It can take a few passes of reading error/warming messages to get them all upda

Re: [R] Message produced under R 3.6.0.

2019-04-29 Thread Marc Schwartz via R-help
Hi Guys, I suspect that this entry from news() for 3.6.0 is relevant: "When loading namespaces, S3 method registrations which overwrite previous registrations are now noted by default (using packageStartupMessage())." Always a good idea to read the NEWS file with a x.y point release. Peter us

Re: [R] Message produced under R 3.6.0.

2019-04-29 Thread Rolf Turner
On 30/04/19 11:08 AM, Bert Gunter wrote: Offlist, as this might be complete baloney. Thanks Bert. I am CC-ing this reply to the r-help list since your suggestion is *NOT* complete baloney at all! What dependencies does your package have? -- is it possible that some of these dependent pa

[R] Message produced under R 3.6.0.

2019-04-29 Thread Rolf Turner
I just installed the latest version of R on my laptop (running Ubuntu 18.04; used "sudo apt-get install r-base".) Now when I load a package that I have written I get a message on screen: Registered S3 methods overwritten by 'ggplot2': method from [.quosures rlang c.quosu

Re: [R] Package for penalized multivariate Regression

2019-04-29 Thread Bert Gunter
I should have added: for multivariate gam models see e.g. ?mvn Bert Gunter On Mon, Apr 29, 2019 at 7:51 AM Bert Gunter wrote: > "but this package do not support multivariate regression." > Wrong. > > "Fits a generalized additive model (GAM) to data, the term ‘GAM’ being > taken to include any

[R] A Question from kamila package

2019-04-29 Thread mahboobe akhlaghi
Hello. I have a question from kamila package. I run this package on my data and the database is on SQL server. now, I have an error that I don't know what should I do. kamrespresc<-kamila(conVarsPresc,catVarsFacPresc,numClust=3,numInit=10) Error in matrix(data = log(gtools::rdirichlet(n = numClust,

[R] (no subject)

2019-04-29 Thread mahboobe akhlaghi
Hello. I have a question from kamila package. I run this package on my data and the database is on SQL server. now, I have an error that I don't know what should I do. kamrespresc<-kamila(conVarsPresc,catVarsFacPresc,numClust=3,numInit=10) Error in matrix(data = log(gtools::rdirichlet(n = numClust,

Re: [R] Package for penalized multivariate Regression

2019-04-29 Thread Bert Gunter
"but this package do not support multivariate regression." Wrong. "Fits a generalized additive model (GAM) to data, the term ‘GAM’ being taken to include any quadratically penalized GLM and a variety of other models estimated by a quadratically penalised likelihood type approach (see family.mgcv <

[R] Package for penalized multivariate Regression

2019-04-29 Thread Dominik Schmidt
Dear all, I want to do a multivariate regression. So I have Y which is a matrix and one vector x which is my predictor variable. I want to do a multivariate regression with penalizing the coefficients I get. Something like: $||y-xb|| + \lambda b^t P b $ But I have a "own" penalty term which I want