Re: [R] AUC/Volume under the surface

2018-12-17 Thread Jeff Newmiller
You need to grasp two concepts: 1) Models in R conventionally have predict methods. To plot your model, predict the dependent variable based on the model object and a grid of your independent variable(s). Whether you have interactions or logistic regression shouldn't be relevant to getting a pl

[R] AUC/Volume under the surface

2018-12-17 Thread Rehena Sultana via R-help
Dear Members,I am having trouble in plotting a 3D ROC curve based on multinomial logistic regression. I am also interested in finding AUC/Volume under the surface based on final multivariate model. I do have an interaction term in my final model.  I tried using "HUM" library. But I failed to fig

Re: [R] Functional data anlysis for unequal length and unequal width time series

2018-12-17 Thread Jeff Newmiller
You will learn something useful if you search for "rolling join". The zoo package can handle this, as can the data.table package (read the vignette). Your decision to pad with NA at the end was ill-considered... the first point of your first series is between the first two points of your second

Re: [R] R code for if-then-do code blocks

2018-12-17 Thread Gabor Grothendieck
There is some discussion of approaches to this here: https://stackoverflow.com/questions/34096162/dplyr-mutate-replace-on-a-subset-of-rows/34096575#34096575 On Mon, Dec 17, 2018 at 10:30 AM Paul Miller via R-help wrote: > > Hello All, > > Season's greetings! > > Am trying to replicate some SAS

Re: [R] Functional data anlysis for unequal length and unequal width time series

2018-12-17 Thread Bert Gunter
Specialized: Probably need to email the maintainer. See ?maintainer Cheers, Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Mon, Dec 17, 2018 at 9:27 AM

Re: [R] error = FALSE causes knit2wp to throw duplicate label error

2018-12-17 Thread Nathan Parsons
Thanks for getting me pointed in the right direction. If I happen upon a satisfactory solution, I will report back! Nate Parsons Pronouns: He, Him, His Graduate Teaching Assistant Department of Sociology Portland State University Portland, Oregon Schedule an appointment: https://calendly.com/nate

Re: [R] [R studio] Plotting of line chart for each columns at 1 page

2018-12-17 Thread Jim Lemon
Hi Subhamitra, As for the error that you mention, it was probably: Error in axis(1, at = year_mids, labels = 3 - 1 - 1994:3 - 8 - 2017) : 'at' and 'labels' lengths differ, 24 != 1992 Anything more than a passing glance reveals that you didn't read the explanation I sent about the arguments pass

Re: [R] R code for if-then-do code blocks

2018-12-17 Thread Richard M. Heiberger
I got another 10% savings with this example by using only one subscripting adjustment. I also fixed a typo in my previous posting (which didn't affect the timing). microbenchmark( rmh={ d3 <-data.frame(ID=rownames(d1), d1, test1=0, test2=0,

Re: [R] Quoting smooth random terms mccv::gam

2018-12-17 Thread Smith, Desmond
Thanks very much, Simon! On 12/17/18, 8:23 AM, "Simon Wood" wrote: I would quote the p-value, but not the statistic (as it is not a standard F stat). The actual statistic is given here: https://urldefense.proofpoint.com/v2/url?u=https-3A__academic.oup.com_biomet_article-2Dpdf

Re: [R] Trying to fix code that will find highest 5 column names and their associated values for each row in a data frame in R

2018-12-17 Thread David L Carlson
There are some problems with your example. Your code does not produce anything like your example data frame because you draw only 9 values without replacement. Your code produces 10 columns, each with the same permutation of the values 1:9. Then your desired output does not make sense in terms

Re: [R] R code for if-then-do code blocks

2018-12-17 Thread Richard M. Heiberger
this can be dome even faster, and I think more easily read, using only base R d1 <- data.frame(workshop=rep(1:2,4), gender=rep(c("f","m"),each=4)) ## needed by vector and rowbased, not needed by rmh library(tibble) library(plyr) library(magrittr) microbenchmark( vector = {d1 %>

[R] Trying to fix code that will find highest 5 column names and their associated values for each row in a data frame in R

2018-12-17 Thread Tom Woolman
I have a data frame each with 10 variables of integer data for various attributes about each row of data, and I need to know the highest 5 variables related to each of row in this data frame and output that to a new data frame. In addition to the 5 highest variable names, I also need to kn

[R] Functional data anlysis for unequal length and unequal width time series

2018-12-17 Thread soura
Dear All, I apologize if you have already seen in Stack Overflow. I have not got any response from there so I am posting for help here. I have data on 1318 time series. Many of these series are of unequal length. Apart from this also quite a few time points for each of the series are o

Re: [R] R code for if-then-do code blocks

2018-12-17 Thread Thierry Onkelinx via R-help
Dear Paul, R's power is that is works vectorised. Unlike SAS which is rowbased. Using R in a SAS way will lead to very slow code. Your examples can be written vectorised d1 %>% rownames_to_column("ID") %>% mutate( test1 = ifelse(gender == "f" & workshop == 1, 7, 0), test2 = ifelse(ge

Re: [R] Quoting smooth random terms mccv::gam

2018-12-17 Thread Simon Wood
I would quote the p-value, but not the statistic (as it is not a standard F stat). The actual statistic is given here: https://academic.oup.com/biomet/article-pdf/100/4/1005/566200/ast038.pdf On 14/12/2018 04:33, Smith, Desmond wrote: Dear All, I have a mgcv::gam model of the form: m1 <- gam

Re: [R] RTerm.exe

2018-12-17 Thread Duncan Murdoch
On 17/12/2018 9:41 AM, pe...@mybetterlife.co.uk wrote: Hi, I have recently downloaded R and accessed. I am using Zorro (a development platform for ForeX) and requested to add my path for RTerm.exe I can't find RTerm.exe and confirm that I appear to load R using "C:\Program Files\R\R

[R] R code for if-then-do code blocks

2018-12-17 Thread Paul Miller via R-help
Hello All, Season's greetings! Am trying to replicate some SAS code in R. The SAS code uses if-then-do code blocks. I've been trying to do likewise in R as that seems to be the most reliable way to get the same result. Below is some toy data and some code that does work. There are some thing

[R] RTerm.exe

2018-12-17 Thread peter
Hi, I have recently downloaded R and accessed. I am using Zorro (a development platform for ForeX) and requested to add my path for RTerm.exe I can't find RTerm.exe and confirm that I appear to load R using "C:\Program Files\R\R-3.5.1\bin\x64\Rgui.exe" Regards Peter H. Willi

Re: [R] display of ECDF

2018-12-17 Thread PIKAL Petr
Hi You should add limits and maybe some rotation to x axis ggplot(df, aes(x, colour = g)) + stat_ecdf() + scale_x_log10(breaks=breaks, limits=c(0.01, 100))+ theme(axis.text.x = element_text(size=8, angle=45)) Cheers Petr > -Original Message- > From: R-help On Behalf Of Bogdan Tanasa >

[R] display of ECDF

2018-12-17 Thread Bogdan Tanasa
Dear all, please could you advise me on the following : I would like to display a few CDF data (the R code is below), by using a set of numerical BREAKS on a X axis to be shown at EQUAL DISTANCE from each other (although numerically, the BREAKS are on log10 axis and do not reflecting an equal dist