Your problem is that the command you entered
> the_data<-read.csv(file=“c:/file_name.csv,header=TRUE,sep=“,”)
is missing a double quote after the .csv. The statement should be
> the_data<-read.csv(file=“c:/file_name.csv",header=TRUE,sep=“,”)
The '+' sign is a prompt from R that indicates it has
Hello all,
To begin my analysis, I downloaded two TCGA datasets (GBM and LGG), both
csv files, onto on r script after loading the cBioLite package. Following
this, I inputted the following argument...
> the_data<-read.csv(file=“c:/file_name.csv,header=TRUE,sep=“,”)
Upon running the line I rece
OK. Thanks for the info!
Sincerely,
Erin
Erin Hodgess, PhD
mailto: erinm.hodg...@gmail.com
On Sun, Aug 26, 2018 at 8:44 PM Jeff Newmiller
wrote:
> Wrong list, though you will probably need to recompile R itself and every
> other package you want to use in conjunction with this special packag
Wrong list, though you will probably need to recompile R itself and every other
package you want to use in conjunction with this special package in order to do
this... and you may not find many or even any people interested in helping as a
result.
On August 26, 2018 7:40:15 PM PDT, Erin Hodgess
Hello!
I need to use the PGI compiler for a new package. Should I ask here or the
development list, please?
Sorry for the airspace if I'm on the wrong list.
Thanks,
Erin
Erin Hodgess, PhD
mailto: erinm.hodg...@gmail.com
[[alternative HTML version deleted]]
___
Caitlin,
Perhaps that is the problem. To be more specific, the data was transferred
from the TCGA database to a CSV file... there are technically two separate
files (CSV) for this analysis one for GBM and one for LGG. Both CVS
files were then individually downloaded onto my open R console. Up
No worries Spencer. There is no downloaded data? Nothing is physically
stored on your hard drive? The dot in the path would be interpreted (no pun
intended!) as something like the following:
If the TCGA data was stored in a file named "tcga_data.dat" and it was in a
directory named "C:\spencer", t
Caitlin,
Forgive me, but I’m not quite sure exactly what your question is asking.
The data is originally from the TCGA and I have it downloaded onto another
R script. I opened a new script to perform the functions I posted to this
forum because I was unable to input any other commands into the c
Thank you! I will make note of that. Unfortunately, lines 1 and 4 of the
first portion of this analysis appear to be where the error begins... to
which several subsequent lines also come up as ‘errored’. Perhaps this is
an issue of the capitalization and/or spacing (something within the text)?
The
You should probably post this on the Bioconductor list rather then here, as
you would more likely find the expertise you seek there. You are using
Bioconductor packages after all.
https://support.bioconductor.org/
Cheers,
Bert
On Sun, Aug 26, 2018 at 2:09 PM Spencer Brackett <
spbracket...@sain
Thanks! Will do.
On Sun, Aug 26, 2018 at 5:37 PM Bert Gunter wrote:
> You should probably post this on the Bioconductor list rather then here,
> as you would more likely find the expertise you seek there. You are using
> Bioconductor packages after all.
>
> https://support.bioconductor.org/
>
>
Good evening,
I am attempting to run the following analysis on TCGA data, however
something is being reported as an error in my arguments... any ideas as to
what is incorrect in the following? Thanks!
1 library(TCGAbiolinks)
2
3 # Download the DNA methylation data: HumanMethylation450 LGG and G
On 26/08/2018 4:40 AM, Patrick Connolly wrote:
On Sat, 25-Aug-2018 at 08:10PM -0400, Duncan Murdoch wrote:
|> On 25/08/2018 7:37 PM, Patrick Connolly wrote:
|> >On Sat, 25-Aug-2018 at 07:53AM -0400, Duncan Murdoch wrote:
|> >
|> >|> On 25/08/2018 6:21 AM, Patrick Connolly wrote:
|> >|> >---
|> >
On 26/08/2018 3:10 AM, Jeremie Juste wrote:
Duncan Murdoch writes:
for ( i in 1:length(var1)){
This is generally a bad idea: if length(var1) == 0, it does the wrong
thing, since 1:0 is c(1L, 0L). Better to use
for ( i in seq_along(var1) ) {
granted. One should check the validity of th
On Sat, 25-Aug-2018 at 08:10PM -0400, Duncan Murdoch wrote:
|> On 25/08/2018 7:37 PM, Patrick Connolly wrote:
|> >On Sat, 25-Aug-2018 at 07:53AM -0400, Duncan Murdoch wrote:
|> >
|> >|> On 25/08/2018 6:21 AM, Patrick Connolly wrote:
|> >|> >---
|> >|> >title: "Barking up the wrong tree"
|> >|> >au
Of course I meant
>If the length of var1 should not be 0 so
stopifnot(length(var)>0)
On Sun, Aug 26, 2018 at 9:10 AM, Jeremie Juste
wrote:
> Duncan Murdoch writes:
>
> >> for ( i in 1:length(var1)){
> >
> > This is generally a bad idea: if length(var1) == 0, it does the wrong
> > thing, sinc
Duncan Murdoch writes:
>> for ( i in 1:length(var1)){
>
> This is generally a bad idea: if length(var1) == 0, it does the wrong
> thing, since 1:0 is c(1L, 0L). Better to use
>
> for ( i in seq_along(var1) ) {
>
granted. One should check the validity of their variables before using
them but I
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