Re: [R] [FORGED] How does findAssocs() calculate the correlation value ??

2017-07-06 Thread Rolf Turner
On 07/07/17 13:55, θ ” wrote: hi: I want to know the math behind the "tm" package findAssocs(). I have found that someone had asked the question before, and have a good explanation by Rick. �]http://r.789695.n4.nabble.com/findAssocs-td3845751.html�^ But I still don't understand how to calcu

Re: [R] Efficient swapping

2017-07-06 Thread Jeff Newmiller
No, that would remap B to A. Convert to character before doing this, then back to factors. -- Sent from my phone. Please excuse my brevity. On July 6, 2017 4:43:00 PM PDT, Ista Zahn wrote: >Untested, but I expect that setting the levels to be the same across >the >two factors > >levels(tmp$R1)

Re: [R] Efficient swapping

2017-07-06 Thread Ista Zahn
Untested, but I expect that setting the levels to be the same across the two factors levels(tmp$R1) <- levels(tmp$R2) <- LETTERS[1:6] and proceeding as before should be fine. Best, Ista On Jul 6, 2017 6:54 PM, "Gang Chen" wrote: Thanks a lot, Ista! I really appreciate it. How about a slightl

Re: [R] Efficient swapping

2017-07-06 Thread Gang Chen
Thanks a lot, Ista! I really appreciate it. How about a slightly different case as the following: set.seed(1) (tmp <- data.frame(x = 1:10, R1 = sample(LETTERS[1:5], 10, replace = TRUE), R2 = sample(LETTERS[2:6], 10, replace = TRUE))) x R1 R2 1 C B 2 B B 3 C E 4 E C 5

Re: [R] Convert date to continuous variable in R

2017-07-06 Thread MacQueen, Don
Looks good, but there are some ways in which I think you’re making it more complicated than necessary. Two calls to plot(), with plot.new() in between, is definitely not needed. Recalculating LAI_simulation$Date three times should not be needed. ## create example data day0 <- as.Date('2009-10-7'

[R] Bayes Factor

2017-07-06 Thread James Henson
Hello R Community; Just posted a question about Bayes Factor. But, just answered my own question. What is needed is to convert a 'dplyr' data frame into a standard data frame. competition2 <- data.frame(competition), where 'competition' is a 'dplyr' data frame with the following class structure.

Re: [R] Efficient swapping

2017-07-06 Thread Ista Zahn
How about foo <- with(list(r1 = tmp$R1, r2 = tmp$R2, swapme = (as.numeric(tmp$R1) - as.numeric(tmp$R2)) %% 2 != 0), { tmp[swapme, "R1"] <- r2[swapme] tmp[swapme, "R2"] <- r1[swapme] tmp }) Best, Ista On Thu, Jul 6, 2017 at 4:06 PM, Gang Chen wrote:

[R] Efficient swapping

2017-07-06 Thread Gang Chen
Suppose that we have the following dataframe: set.seed(1) (tmp <- data.frame(x = 1:10, R1 = sample(LETTERS[1:5], 10, replace = TRUE), R2 = sample(LETTERS[1:5], 10, replace = TRUE))) x R1 R2 1 1 B B 2 2 B A 3 3 C D 4 4 E B 5 5 B D 6 6 E C 7 7 E D 8 8 D E 9 9

[R] Bayes Factor

2017-07-06 Thread James Henson
Hello R Community, Subject: Bayes Factor A Bayesian ANOVA of the form: competitionBayesOut <- anovaBF(biomass ~ clipping, data = competition) Returns the following Error message: Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘compare’ for signature

[R] Help documentation of "The Studentized range Distribution"

2017-07-06 Thread Ursula Garczarek
Dear all, I wanted to compare Bonferroni vs TukeyHSD correction over a range of groups and group sizes, and wanted to use the function qtukey. In the help documentation it says qtukey(p, nmeans, df, nranges = 1, lower.tail = TRUE, log.p = FALSE) Arguments q vector of quantiles. p vector of pr

Re: [R] Generate simulated data respecting some conditions

2017-07-06 Thread Jeff Newmiller
Yes, definitely. However, this is so close to being legal R code that I feel you have not made any effort to translate it yourself, and this is the "R-help" mailing list, not the "R-do-my-work-for-me" mailing list. Is this homework? Have you read the "Introduction to R" document that is supplie

[R] Generate simulated data respecting some conditions

2017-07-06 Thread Marine Regis
Hello, Is it possible to generate simulated data that look like the attached figure? The curve in the figure can be obtained from this equation respecting some conditions: if(Temperature > T_min & Temperature < T_max){ a*( Temperature -T_min)*( Temperature -T_max) } else 0 T_min ~ Unif

Re: [R] How can I make the legend in ggplot2 the same height as my plot?

2017-07-06 Thread Robert Baer
Don't know what your data looks like, but you might try: p <- Scenario1+guides(fill = guide_colorbar(bar width = 1.5, barheight = unit(10, "mm"))) print(p) On 7/5/2017 5:13 PM, Kristi Glover wrote: Hi R Users, I tried to increase the legend height in ggplot2, but it did not respond at al

Re: [R] Convert date to continuous variable in R

2017-07-06 Thread Ahmed Attia
Thanks it worked for me. I wanted to plot days since planting on x-axis 1 and years on x-axis 3. LAI_simulation$Date <- as.Date( LAI_simulation$Date, '%Y/%m/%d') LAI_simulation$Date <- as.integer(LAI_simulation$Date - as.Date("2009-10-07")) plot(LAI~Date,data=LAI_simulation,xlab="Days since Oct, 7

[R] svm.formula versus svm.default - different results

2017-07-06 Thread Cristina Pascual
Dear community, I'm performing svm-regression with svm at library e1071. As I wrote in another post: "svm e1071 call - different results", I get different results if I use the svm.default rather than the svm.formula, being better the ones at svm.formula I've debugged both options. While

[R] Plantuml package for R

2017-07-06 Thread Rainer Krug
Hi I hope I can use this R mailing list for this but it seems appropriate. I started writing a small package which enables me to create plantuml graphs from within R. It is working and available on GitHub at https://github.com/rkrug/plantuml It is at the moment very rudimentary and can either

Re: [R] Question about correlation

2017-07-06 Thread Göran Broström
Please keep the conversation on the list: Others may be able to help you better than I can. On 2017-07-06 10:38, SEB140004 Student wrote: Ya. I had successfully got the result. Thank you very much. :) Isn't possible for me to obtain the network from the correlation matrix? I know nothing abo