Re: [R] R Package installation

2016-08-12 Thread Divakar Reddy
parallel is R's base package and it's already installed with base R. check in below location: /usr/lib64/R/library/ Thanks, Divakar On Fri, Aug 12, 2016 at 3:53 AM, Dayalan, Nithya wrote: > Hi Team, > > We are receiving the below message while updating the package. Please help. > > > install.

Re: [R] R Package installation

2016-08-12 Thread Jeff Newmiller
This may not have anything to do with the OP's problem, but if permissions are an issue then it should be mentioned. One problem that some windows users encounter is thinking they should "Run As" administrator when installing or running R, rather than letting Windows UAE prompt them for privi

Re: [R] R Package installation

2016-08-12 Thread John Dougherty
On Fri, 12 Aug 2016 06:53:03 -0400 "Dayalan, Nithya" wrote: You don't say what OS you are using, though the packages you were trying to obtain are apparently for Windows. You also don't say whether you are using something like R-Studio, or whether you are on a company network behind a firewall.

Re: [R] Adding loess lines subsetting to each panel in lattice plot

2016-08-12 Thread Bert Gunter
Try reading ?panel.loess. There is no "subset" argument, so it is of course ignored. -- Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Fri, Aug 12, 201

Re: [R] glm.fit: fitted probabilities numerically 0 or 1 occurred & glm.fit: algorithm did not converge

2016-08-12 Thread David Winsemius
> On Aug 12, 2016, at 11:32 AM, Shivi Bhatia wrote: > > Hi Michael, > > In all the masking process some of the variables were missed. Please find > the updated file. > > Also here is the updated code: (i am removed one of the var as it had > missing information): > > glm.fit= glm(survey ~ sup

Re: [R] glm.fit: fitted probabilities numerically 0 or 1 occurred & glm.fit: algorithm did not converge

2016-08-12 Thread Shivi Bhatia
Hi Michael, In all the masking process some of the variables were missed. Please find the updated file. Also here is the updated code: (i am removed one of the var as it had missing information): glm.fit= glm(survey ~ support_cat + region+ support_lvl+ skill_group+ application_area+ functional_a

[R] Parallelize lme4

2016-08-12 Thread chiarosscuro
Hi all, In using the lme4 package to construct multi-level models, I notice that for large datasets (~30 data points, >100 groups, possibly cross/nested effects) model fitting can be very slow (>2 hours). I have even larger data sets that I'd like to model, but hesitate due to concerns about

Re: [R] Help with non standard evaluation and require function

2016-08-12 Thread David Winsemius
> On Aug 12, 2016, at 8:57 AM, Luca Cerone wrote: > > Hi everybody, > I am having a hard time in understanding how to deal with non standard > evaluation and the require function. > > I asked about it on Stackoverflow at > http://stackoverflow.com/questions/38922012/r-function-to-install-missin

Re: [R] R Package installation

2016-08-12 Thread David Winsemius
> On Aug 12, 2016, at 7:48 AM, Dayalan, Nithya wrote: > > Hi Jeff, > > Before selecting the mirror I am receiving the error: I can able connect > internet in server Sorry for the blank message just now, but it appears that this is some ambiguity in your statement that you can connect to the

Re: [R] R Package installation

2016-08-12 Thread David Winsemius
> On Aug 12, 2016, at 7:48 AM, Dayalan, Nithya wrote: > > Hi Jeff, > > Before selecting the mirror I am receiving the error: I can able connect > internet in server and also I have already done this package installation > before 2 weeks. > > Error in download.file(url, destfile = f, quiet =

Re: [R] glm.fit: fitted probabilities numerically 0 or 1 occurred & glm.fit: algorithm did not converge

2016-08-12 Thread Michael Dewey
Your example code refers to a variable which is not in your dataset (repS) so I get an error message. If I assume repS is in fact rep_score I get another variable not found (delivery_segmentation). I am afraid that I am unable to sort that one out so this is going to remain a mystery. I endors

Re: [R] Help with non standard evaluation and require function

2016-08-12 Thread Duncan Murdoch
On 12/08/2016 11:57 AM, Luca Cerone wrote: Hi everybody, I am having a hard time in understanding how to deal with non standard evaluation and the require function. I asked about it on Stackoverflow at http://stackoverflow.com/questions/38922012/r-function-to-install-missing-packages, below you

[R] Adding loess lines subsetting to each panel in lattice plot

2016-08-12 Thread Juan Perez via R-help
Hello, I've created an xyplot and I want to add a loess line for x (Age)  <=40 and another for values >40. In a way it is similar to this https://stat.ethz.ch/pipermail/r-help/2009-May/390502.html but still not succcessful. This is my try: xyplot(MOE~Age|Species, groups=Site,    panel = fu

Re: [R] R Package installation

2016-08-12 Thread Dayalan, Nithya
Hi David, Okay thank you, but the error message receiving for other packages. > install.packages("Rtsne", lib="D:/Program Files/R/R-3.2.5/library") --- Please select a CRAN mirror for use in this session --- Error in download.file(url, destfile = f, quiet = TRUE) : cannot open URL 'https://cra

Re: [R] R Package installation

2016-08-12 Thread Dayalan, Nithya
Hi Jeff, Before selecting the mirror I am receiving the error: I can able connect internet in server and also I have already done this package installation before 2 weeks. Error in download.file(url, destfile = f, quiet = TRUE) : cannot open URL 'https://cran.r-project.org/CRAN_mirrors.csv' I

Re: [R] R Package installation

2016-08-12 Thread Dayalan, Nithya
Yes Jeff, I tried it with 10 mirrors. Thanks & Regards, Nithya Dayalan AMS MRL DPS | HCL @ Merck E-mail: nithya.daya...@merck.com Tel#+91 44 61053951| Mobile +91 8754232975 -Original Message- From: Jeff Newmiller [mailto:jdnew...@dcn.davis.ca.us] Sent: Friday, August 12, 2016 10:43 AM T

[R] Help with non standard evaluation and require function

2016-08-12 Thread Luca Cerone
Hi everybody, I am having a hard time in understanding how to deal with non standard evaluation and the require function. I asked about it on Stackoverflow at http://stackoverflow.com/questions/38922012/r-function-to-install-missing-packages, below you can find my question. Thanks a lot for the h

Re: [R] glm.fit: fitted probabilities numerically 0 or 1 occurred & glm.fit: algorithm did not converge

2016-08-12 Thread Shivi Bhatia
Sure Burt, i will share the data after masking it. it isn't big regards, Shivi On Fri, Aug 12, 2016 at 8:36 PM, Bert Gunter wrote: > 1. No, changing to factor will make no difference. > > 2. I think that most likely your problem is your model is not > estimable/your design matrix is singular.

Re: [R] R Package installation

2016-08-12 Thread David Winsemius
> On Aug 12, 2016, at 7:53 AM, Dayalan, Nithya wrote: > > Hi David, > > Okay thank you, but the error message receiving for other packages. > >> install.packages("Rtsne", lib="D:/Program Files/R/R-3.2.5/library") > --- Please select a CRAN mirror for use in this session --- > Error in download

Re: [R] glm.fit: fitted probabilities numerically 0 or 1 occurred & glm.fit: algorithm did not converge

2016-08-12 Thread Bert Gunter
1. No, changing to factor will make no difference. 2. I think that most likely your problem is your model is not estimable/your design matrix is singular. You should resolve this by consulting with a local statistical expert or, if your data set is not too large or confidential, posting your full

Re: [R] glm.fit: fitted probabilities numerically 0 or 1 occurred & glm.fit: algorithm did not converge

2016-08-12 Thread Shivi Bhatia
Hi Michael, There is no output as the model does not generate any coefficients and simply throws this error. I hope you are not asking for a reproducible example. On Fri, Aug 12, 2016 at 7:30 PM, Michael Dewey wrote: > Dear Shivi > > Can you show us the output? > > And please do not post in HT

Re: [R] R Package installation

2016-08-12 Thread David Winsemius
> On Aug 12, 2016, at 3:53 AM, Dayalan, Nithya wrote: > > Hi Team, > > We are receiving the below message while updating the package. Please help. > >> install.packages("parallel", lib="D:/Program Files/R/R-3.2.5/library") > Warning: unable to access index for repository > https://cran.fhcrc.

Re: [R] R Package installation

2016-08-12 Thread Jeff Newmiller
Choose A Different Mirror -- Sent from my phone. Please excuse my brevity. On August 12, 2016 3:53:03 AM PDT, "Dayalan, Nithya" wrote: >Hi Team, > >We are receiving the below message while updating the package. Please >help. > >> install.packages("parallel", lib="D:/Program >Files/R/R-3.2.5/

[R] R Package installation

2016-08-12 Thread Dayalan, Nithya
Hi Team, We are receiving the below message while updating the package. Please help. > install.packages("parallel", lib="D:/Program Files/R/R-3.2.5/library") Warning: unable to access index for repository https://cran.fhcrc.org/src/contrib: cannot open URL 'https://cran.fhcrc.org/src/contrib/P

Re: [R] glm.fit: fitted probabilities numerically 0 or 1 occurred & glm.fit: algorithm did not converge

2016-08-12 Thread Michael Dewey
Dear Shivi Can you show us the output? And please do not post in HTML as it will mangle your post into unreadability. On 12/08/2016 10:10, Shivi Bhatia wrote: Hi Team, I am creating *my first* Logistic regression on R Studio. I am working on a C-SAT data where rating (score) 0-8 is a dis-sa

[R] curl problem in install.packages

2016-08-12 Thread Dr. Kristian Unger via R-help
Hi there, I have just compiled R 3.3.1 on my SuSE SLES 11 SP2 server. All works fine but I cannot use the install.packages function since there is an issue with the underlying curl command which requires a ca certificate in order to download files. 1: In download.file(url, destfile = f, quiet

[R] glm.fit: fitted probabilities numerically 0 or 1 occurred & glm.fit: algorithm did not converge

2016-08-12 Thread Shivi Bhatia
Hi Team, I am creating *my first* Logistic regression on R Studio. I am working on a C-SAT data where rating (score) 0-8 is a dis-sat whereas 9-10 are SAT. As these were in numeric form so i had as below created 2 classes: new$survey[new$score>=0 & new$score<=8]<- 0 new$survey[new$score>=9]<- 1 T

Re: [R] structure breakpoint for panel data

2016-08-12 Thread Michael Dewey
There are many packages with names like breakpoint, segmented, strucchange, I have no idea which of them if any will meet your use case. On 11/08/2016 22:13, farzana akbari wrote: in the name of God hi can you help me and tell which package and function can calculate structure breakpoin

Re: [R] cpquery problem

2016-08-12 Thread ross.chapman
Hi Marco Thanks again for your comments. First, I used the term "EST = y" in my original query as a shorthand, I have used the terms "K1", "M1", and "M2" for all actual queries. If I might expand on the outputs I am getting, I have run predict for the term "ABW" on a data vector with th