Re: [R] Grep command

2016-05-19 Thread Joyce Robbins
I'm not sure you need grep: > all %in% some [1] TRUE FALSE TRUE FALSE FALSE TRUE On Thu, May 19, 2016 at 7:58 PM, MacQueen, Don wrote: > Start with: > > > all <- c("ants","birds","cats","dogs","elks","fox") > > all[grep('ants|cats|fox',all)] > [1] "ants" "cats" "fox" > > Then construct the f

Re: [R] how to perform multiple comparison?

2016-05-19 Thread David Winsemius
> On May 19, 2016, at 5:19 PM, Jim Lemon wrote: > > Hi laomeng_3, > Have a look at the padjust function (stats). > > Jim > > > On Fri, May 20, 2016 at 1:56 AM, laomeng_3 wrote: >> Hi all: >> As to the anova, we can perform multiple comparison via TukeyHSD. >> But as to chi-square test for fr

Re: [R] how to perform multiple comparison?

2016-05-19 Thread Jim Lemon
Hi laomeng_3, Have a look at the padjust function (stats). Jim On Fri, May 20, 2016 at 1:56 AM, laomeng_3 wrote: > Hi all: > As to the anova, we can perform multiple comparison via TukeyHSD. > But as to chi-square test for frequency table,how to perform multiple > comparison? > > For example,

Re: [R] Grep command

2016-05-19 Thread MacQueen, Don
Start with: > all <- c("ants","birds","cats","dogs","elks","fox") > all[grep('ants|cats|fox',all)] [1] "ants" "cats" "fox" Then construct the first arg to grep: > some <- c("ants","cats","fox") > all[ grep( paste(some,collapse='|') , all)] [1] "ants" "cats" "fox" -- Don MacQueen Lawrence Li

Re: [R] Grep command

2016-05-19 Thread David Winsemius
> On May 19, 2016, at 4:09 PM, Steven Yen wrote: > > What is a good way to grep multiple strings (say in a vector)? In the > following, I grep ants, cats, and fox separately and concatenate them, > is there a way to grep the trio in one action? Thanks. > > all<-c("ants","birds","cats","dogs",

Re: [R] Can I use PhantomJS or assume a firefox instalattion for usage with RSelenium in CRAN Machines?

2016-05-19 Thread David Winsemius
> On May 19, 2016, at 7:49 AM, Marcelo Perlin wrote: > > Hi Guys, > > First time posting here. > > I have a CRAN package called GetTDData that downloads and reads public data > from a government website ( > http://www.tesouro.fazenda.gov.br/tesouro-direto-balanco-e-estatisticas). > > Recently

Re: [R] Grep command

2016-05-19 Thread Peter Langfelder
I use my own functions multiGrep and multiGrepl: multiGrep = function(patterns, x, ..., sort = TRUE, invert = FALSE) { if (invert) { out = multiIntersect(lapply(patterns, grep, x, ..., invert = TRUE)) } else out = unique(unlist(lapply(patterns, grep, x, ..., invert = FALSE))); if (

[R] Grep command

2016-05-19 Thread Steven Yen
What is a good way to grep multiple strings (say in a vector)? In the following, I grep ants, cats, and fox separately and concatenate them, is there a way to grep the trio in one action? Thanks. all<-c("ants","birds","cats","dogs","elks","fox"); all [1] "ants" "birds" "cats" "dogs" "elks" "

Re: [R] error in data.farme--duplicate row.names error

2016-05-19 Thread MacQueen, Don
You will probably have to contact the maintainer of the package, since the error appears to be generated inside the package's function. Immediately after the error, type traceback() The results might give you a clue. Or they might not! There might be some requirements on the second argument of

[R] No map background showed up when adding tile in leaflet()

2016-05-19 Thread Lin, Ye
Hey All, I am learning to create a map with leaflet(), but my default map background won't show up, its just grey. Here is my code: leaflet() %>% addTiles() addCircleMarkers(lng=points$lon,lat=points$lat, radius=6,stroke=FALSE,fillOpacity = 0.5) When I run the code, th

Re: [R] Fw: R STUDIO crashing

2016-05-19 Thread Bert Gunter
Rezvan: "This is not help after keeping me waiting for long time. Such a waste of time corresponding with you. " You do understand that this is entirely a volunteer effort, do you not? There is no guarantee that you will get any response at all, nor that any that you do receive is actually helpf

Re: [R] Vectorised operations

2016-05-19 Thread MacQueen, Don
In keeping with the theme of reducing unnecessary overhead (and using William's example data) > system.time( vAve <- ave(a, i, FUN=cummax) ) user system elapsed 0.125 0.003 0.127 > system.time( b <- unlist( lapply( split(a,i) , cummax) ) ) user system elapsed 0.320 0.007 0.327

Re: [R] ggplot2 not displaying graph in RH7 RStudio Server 3.2.3

2016-05-19 Thread Tom Wright
I just tested your code on my debian install with no problems. RStudio server logs messages to /var/log/messages (on redhat). Does running: $ cat /var/log/messages |grep rsession $ cat /var/log/messages |grep rserver in the shell give any clues? R version 3.2.5 (2016-04-14) Platform: x86_64-p

Re: [R] error in data.farme--duplicate row.names error

2016-05-19 Thread Rees, Lisa Marie (MU-Student)
Michael, Thanks for your response. I tried table(table(Bmat)) and it gave me the following error: [ Error in table(Bmat) : object 'Bmat' not found] FYI-- "values" contains 16,383 observations ranging from 0 to less than 1. Lisa -Original Message- From: Michael Dewey [mailto:li...@

[R] how to perform multiple comparison?

2016-05-19 Thread laomeng_3
Hi all: As to the anova, we can perform multiple comparison via TukeyHSD. But as to chi-square test for frequency table,how to perform multiple comparison? For example, if I want to compare 3 samples' ratio(the data has 3 rows,each row corresponds to 1 sample,and has 2 columns,each column corres

Re: [R] error in data.farme--duplicate row.names error

2016-05-19 Thread Michael Dewey
Dear Lisa What does Bmat contain? Perhaps try table(table(Bmat)) and see if any entries are greater than unity. On 19/05/2016 15:16, Rees, Lisa Marie (MU-Student) wrote: I'm using the "GameTheory" package--- DefineGame(14,values) and values is equal to 16,383 observations. I keep getting th

[R] remove fixed effect in predict.merMod

2016-05-19 Thread Alexander Shenkin
Hello all, I've run a model, and now would like to extract residuals. However, I have set sum-to-zero contrasts for the categorical fixed effect (contr.sum). Because I am interested in looking at the variation in the residuals associated with that fixed effect (along with other levels), I n

[R] Fw: R STUDIO crashing

2016-05-19 Thread rezvan hatami via R-help
- Forwarded Message - From: rezvan hatami To: Shige Song Sent: Thursday, 19 May 2016, 17:38 Subject: Re: [R] R STUDIO crashing I didn't say that there is a problem with R or Rstudio. I said, it keeps crashing for whatever reason. If it is not crashing on your computer It

Re: [R] Placement of words in a word cloud as per its occurance.

2016-05-19 Thread shaila shailaja
Thank you Peter for pointing out my errors. I shall take care of if henceforth. To keep the mail short I left out the details, sorry about that.   I am using wordcloud package to built a comparative and commonality cloud. My usage: comparison.cloud(term.matrix,max.words=300)commonali

[R] Can I use PhantomJS or assume a firefox instalattion for usage with RSelenium in CRAN Machines?

2016-05-19 Thread Marcelo Perlin
Hi Guys, First time posting here. I have a CRAN package called GetTDData that downloads and reads public data from a government website ( http://www.tesouro.fazenda.gov.br/tesouro-direto-balanco-e-estatisticas). Recently (today), the website has changed its structure by removing permanent links

[R] error in data.farme--duplicate row.names error

2016-05-19 Thread Rees, Lisa Marie (MU-Student)
I'm using the "GameTheory" package--- DefineGame(14,values) and values is equal to 16,383 observations. I keep getting the following error- [Error in data.frame(rep(0, 2^n - 1), row.names = Bmat) : duplicate row.names: 1, 11, 111, 12, 112, 1112, 2, 13, 113, 1113, 3, 1213, 11213, 111213

Re: [R] x-axis tick marks on log scale plot

2016-05-19 Thread Brian Smith
Thanks all !! On Thu, May 19, 2016 at 9:55 AM, Ivan Calandra wrote: > Hi, > > You can do it by first plotting your values without the x-axis: > plot(x,y,log="xy", xaxt="n") > > and then plotting the x-axis with ticks where you need to: > axis(side=1, at=seq(2000,8000,1000)) > > HTH, > Ivan > > -

Re: [R] x-axis tick marks on log scale plot

2016-05-19 Thread Ivan Calandra
Hi, You can do it by first plotting your values without the x-axis: plot(x,y,log="xy", xaxt="n") and then plotting the x-axis with ticks where you need to: axis(side=1, at=seq(2000,8000,1000)) HTH, Ivan -- Ivan Calandra, PhD Scientific Mediator University of Reims Champagne-Ardenne GEGENAA - E

Re: [R] x-axis tick marks on log scale plot

2016-05-19 Thread Duncan Murdoch
On 19/05/2016 9:40 AM, Brian Smith wrote: Hi, I have a plot with log scale on the axes. How do I add ticks and labels in addition to the ones provided by default? Can I specify where I want the ticks and labels? For example: set.seed(12345) x <- sample(1:1,10) y <- sample(1:1,10) plot

[R] x-axis tick marks on log scale plot

2016-05-19 Thread Brian Smith
Hi, I have a plot with log scale on the axes. How do I add ticks and labels in addition to the ones provided by default? Can I specify where I want the ticks and labels? For example: set.seed(12345) x <- sample(1:1,10) y <- sample(1:1,10) plot(x,y,log="xy") For me, this plot has tick

Re: [R] Install GARPFRM package

2016-05-19 Thread Ogbos Okike
Hi Saba, Your main worry may be that of non- zero status and hence your attempt to load what the system claims you have. I have encountered such problems severally. You can try two things: run it several times ( network issues might play a role) or try different crab mirrors. Ogbos On May 19, 2016

Re: [R] R STUDIO crashing

2016-05-19 Thread Joe Ceradini
Also, this starting happening for me with R studio 0.99.893, so if you have a different version, maybe it is a different issue (or maybe it is a different issue regardless...). Joe On Thu, May 19, 2016 at 7:27 AM, Joe Ceradini wrote: > I had this problem as well, a lot, and it was frustrating a

Re: [R] R STUDIO crashing

2016-05-19 Thread Joe Ceradini
I had this problem as well, a lot, and it was frustrating and I did not find much reference to it online. I believe it occurs after you run a plot and then make the plotting window too small for R studio to redraw the plot. Then when run a line of code, it never runs or appears to be running indefi

Re: [R] RSTUDIO keeps crashing-please help me

2016-05-19 Thread John Kane
What happens if you run R in a console or the Windows GUI if you are using Windows We need to isolate the issue as an R issue or an RStudio one or a local computer one. My experience is that occasionally RStudio will do something a bit weird but usually rebooting RStudio cures it. If it appe

Re: [R] RSTUDIO keeps crashing-please help me

2016-05-19 Thread Duncan Murdoch
On 18/05/2016 6:46 AM, rezvan hatami via R-help wrote: Hi there I have been using R for a while now. I am doing my PhD project with it. Recently, it keeps crashing, mostly when I draw a graph and use XYPLOT code. I even spent some money on cleaning registry, checking ram, deleting unnecessary f

Re: [R] 3D plots in R.3.2.3

2016-05-19 Thread Denis Francisci
For 3D scatterplot you can use also "scatterplot3d" package. 2016-05-19 8:40 GMT+02:00 David Winsemius : > > > On May 18, 2016, at 7:51 AM, ch.elahe via R-help > wrote: > > > > > > Hi all, > > I am using R version 3.2.3 and I want to plot 3D histogram or 3D > scatterplot. Does anyone know which