Re: [R] faster way to use filter this

2016-04-15 Thread David Winsemius
> On Apr 15, 2016, at 5:58 PM, Paul Tremblay wrote: > > I have the following (simplified) vectors: > index <- c("shoe" "shirt" "fruit") > cost <- c(100, 50, 2) > data <- c("shirt", "shoe", "vegetable") > > I want my outcome to be: > > (50, 100, 0) > > (shirt => 50, shoe => 100, vegetable =>

Re: [R] Decision Tree and Random Forrest

2016-04-15 Thread Michael Artz
Thanks bill that will give the result I would like, however the example I used is not the actual data I'm working with. I have 25 or so columns, each with 1-5 factors and 4 off them are numerical. On Fri, Apr 15, 2016 at 5:44 PM, William Dunlap wrote: > Since you only have 3 predictors, each ca

[R] R [loop statement ]

2016-04-15 Thread tan sj
hi, i am new in this field. I am now writing a code in robustness simulation study. I have written a brief code "for loop" for the factor (samples sizes d,std deviation ) , i wish to test them in gamma distribution with equal and unequal skewness, with the above for loop in a single code if pos

Re: [R] help on moving data from local to HDFS using RODBC in R

2016-04-15 Thread Jeff Newmiller
Why? RODBC is usable for reading data, but not particularly well adapted for inserting data. So if you have a solution, why are you still looking for one? -- Sent from my phone. Please excuse my brevity. On April 15, 2016 2:47:52 PM PDT, Divakar Reddy wrote: >Hi, > >I have requirement to mov

[R] faster way to use filter this

2016-04-15 Thread Paul Tremblay
I have the following (simplified) vectors: index <- c("shoe" "shirt" "fruit") cost <- c(100, 50, 2) data <- c("shirt", "shoe", "vegetable") I want my outcome to be: (50, 100, 0) (shirt => 50, shoe => 100, vegetable => not found, so 0) I have written the following function: for (i in custom_l

Re: [R] Decision Tree and Random Forrest

2016-04-15 Thread William Dunlap via R-help
Since you only have 3 predictors, each categorical with a small number of categories, you can use expand.grid to make a data.frame containing all possible combinations and give that the predict method for your model to get all possible predictions. Something like the following untested code. n

Re: [R] Decision Tree and Random Forrest

2016-04-15 Thread Michael Artz
I need the output to have groups and the probability any given record in that group then has of being in the response class. Just like my email in the beginning i need the output that looks like if A and if B and if C then %77 it will be D. The examples you provided are just simply not similar. Th

[R] help on moving data from local to HDFS using RODBC in R

2016-04-15 Thread Divakar Reddy
Hi, I have requirement to move the data from Linux local path( ex /home/user/sample.txt) to hadoop HDFS using RODBC in R I knew that we can move the data using rhive comamnds like *rhive.put* and *rhive.get *but looking for similar commands using RODBC as well. I would appreciate for your input

Re: [R] Multicollinearity & Endogeniety : PLSPM

2016-04-15 Thread David Winsemius
> On Apr 15, 2016, at 1:07 PM, deva d wrote: > > Hi > > I need a bit of guidance on tests and methods to look for multicollinearity > and Endogeniety while using plspm R help is not set up for statistical guidance. You probably need to post a more detailed question about your data and analyti

Re: [R] Unequal column lengths

2016-04-15 Thread John Kane
Many basic summary stats in R will not work (i.e. usually return an NA) if there are NAs in the data unless you explicitylauthorize it to do so. With your data set df with(df, mean(Dat2, na.rm = TRUE)) [1] 5 This by the way is functionally the same as mean(df$Dat2, na.rm = TRUE) It's just easi

[R] Multicollinearity & Endogeniety : PLSPM

2016-04-15 Thread deva d
Hi I need a bit of guidance on tests and methods to look for multicollinearity and Endogeniety while using plspm Pl help -- T&R ... Deva [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRI

Re: [R] Odds Ratio and OR CI

2016-04-15 Thread John Kane
Please don't post in HTML. Your post is almost unreadable Also,lease have a look at http://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example and/or http://adv-r.had.co.nz/Reproducibility.html for some suggestions about what you should include in your question. Welco

Re: [R] New member

2016-04-15 Thread John Kane
There are a number of articles and even books at the R site that are worth looking at. Look Dnder documentation on the main page of the site. This link may also help http://www.burns-stat.com/documents/tutorials/ John Kane Kingston ON Canada > -Original Message- > From: kipkorirfrank

Re: [R] Need Help to solve an Error in R

2016-04-15 Thread David Winsemius
> On Apr 15, 2016, at 6:07 AM, PIKAL Petr wrote: > > Hi > > Keep your answers to R help (others can help you too) > > From the warning message it seems to me possible that function ReadExi needs > to write something to the working directory. As I said I am not an expert in > this package, bu

[R] Difficulty with LRSM Rasch analysis with eRm package in R.

2016-04-15 Thread Nicholas Commons-Miller
Hi, I am trying to do an LRSM Rasch analysis for 72-item data. 67 of the items are binary, and 5 are ternary. I have tried it with and without a specified matrix, and cannot get it to work. The primary problems I am having are: 1. Without a matrix, I get an error: Error in `rownames<-`(`*tmp*`

[R] R stops responding/communicating in for loop (lengthy description of issue)

2016-04-15 Thread Robert D. Bowers
Yeah, this is a bit lengthy, but it's a vexing problem. First, I'm working on learning R, mainly by using it and coming more from a programming aspect (I have the books and have gone through them, but learn best by doing). I have multiple projects going where R is almost necessary. I learned

Re: [R] Heteroscedasticity in a percent-cover dataset

2016-04-15 Thread Cade, Brian
Quit trying to eliminate heteroscedasticity in your data - there is information there in the pattern of changing variances. I would suggest instead that you go directly after modeling the change in entire distributional form by using quantile regression (package quantreg). So, for example, depen

Re: [R] aggregate combination data

2016-04-15 Thread ruipbarradas
Hello, I'm cc'ing R-Help. Sorry but your question was asked 3.5 years ago, I really don't remember it. Can you please post a question to R-Help, with a reproducible example that describes your problem? Rui Barradas   Citando catalin roibu : > Dear Rui, >   > I helped me some time ago with

Re: [R] simple interactions

2016-04-15 Thread Martin Maechler
> Therneau, Terry M , Ph D > on Fri, 15 Apr 2016 06:58:22 -0500 writes: > I'd like to get interaction terms in a model to be in > another form. Namely, suppose I had variables age and > group, the latter a factor with levels A, B, C, with age * > group in the model.

Re: [R] simple interactions

2016-04-15 Thread Therneau, Terry M., Ph.D.
I was right that there is an easy answer! Thanks for the 3 quick answers, all three correct and useful. Terry Therneau On 04/15/2016 07:15 AM, Thierry Onkelinx wrote: Dear Terry, Does fitting group + age:group instead of age*group solves your problem? Best regards, ir. Thierry Onkelinx 2

Re: [R] Need Help to solve an Error in R

2016-04-15 Thread PIKAL Petr
Hi Keep your answers to R help (others can help you too) From the warning message it seems to me possible that function ReadExi needs to write something to the working directory. As I said I am not an expert in this package, but commands from help R> make.gal.env(galname='galenv', gal.path='Ex

Re: [R] simple interactions

2016-04-15 Thread Achim Zeileis
Try using ~ group/age or even ~ 0 + group/age Both have all three group-specific slopes but differ with respect to the intercept codings. The latter has three group-specific intercepts as well. But the former has an intercept corresponding to the reference group A and then the usual treatm

Re: [R] Need Help to solve an Error in R

2016-04-15 Thread PIKAL Petr
Hi If you recently start with R maybe you shall spend some time with R intro document to understand R basics. I looked to ExiMiR package and I must say that although I am after 20 years quite familiar with R I have problems to understand what I should do and I would need to study thoroughly ho

Re: [R] simple interactions

2016-04-15 Thread Thierry Onkelinx
Dear Terry, Does fitting group + age:group instead of age*group solves your problem? Best regards, ir. Thierry Onkelinx Instituut voor natuur- en bosonderzoek / Research Institute for Nature and Forest team Biometrie & Kwaliteitszorg / team Biometrics & Quality Assurance Kliniekstraat 25 1070 An

Re: [R] Bug in by() function which works for some FUN argument and does not work for others

2016-04-15 Thread Duncan Murdoch
On 15/04/2016 4:16 AM, Akhilesh Singh wrote: Dear All, Thanks for your help. However, I would like to draw your attention to the following: Actually, I was replicating the Example 2.3, using the dataset "brainsize.txt" given in Section 2.3.3 ("Summarize by group") at page 55, of a famous book "

[R] Need Help to solve an Error in R

2016-04-15 Thread Jyoti Sharma
Hello Sir/ma'am, Greetings for the Day ! I am Jyoti Sharma, from India and recently start working on R. I am new in this field and my knowledge is not up to the mark, so if I sound dumb then please forgive me. I tried to read some text file in R so that I can do further analysis on those files.

Re: [R] Bug in by() function which works for some FUN argument and does not work for others

2016-04-15 Thread peter dalgaard
Books don't rewrite themselves retroactively NEWS for 3.0.0 has • mean() for data frames and sd() for data frames and matrices are defunct. and 3.0.0 was released April 3, 2013. A book published in 2012 would likely be based on R 2.13.x or maybe even 2.12.x. So mean(dataframe) wor

[R] simple interactions

2016-04-15 Thread Therneau, Terry M., Ph.D.
I'd like to get interaction terms in a model to be in another form. Namely, suppose I had variables age and group, the latter a factor with levels A, B, C, with age * group in the model. What I would like are the variables "age:group=A", "age:group=B" and "age:group=C" (and group itself of c

[R] 2016 Modern Modeling Methods Conference

2016-04-15 Thread Mccoach, D. Betsy
The 6th annual Modern Modeling Methods Conference will be held on May 24-25, 2016 at the University of Connecticut. This year's keynote speakers are Andrew Gelman and Bengt Muthen. May 23rd, Bengt Muthen is offering a full-day pre-conference workshop on Advances in Latent Variable Modeling in M

Re: [R] a replace for subset

2016-04-15 Thread Jim Lemon
Hi Elahe, When you want to include a usable toy data frame, it's better to use something like: dput(mydata[1:100]) So if we have a data frame like this: mydata<-data.frame(RE=sample(5:50,100,TRUE), LU=sample(1500:4500,100), COUNTRY=factor(sample(c("DE","FR","JP","AU"),100,TRUE)), Light=fac

Re: [R] Bug in by() function which works for some FUN argument and does not work for others

2016-04-15 Thread David Winsemius
> On Apr 15, 2016, at 1:16 AM, Akhilesh Singh > wrote: > > Dear All, > > Thanks for your help. However, I would like to draw your attention to the > following: > > Actually, I was replicating the Example 2.3, using the dataset > "brainsize.txt" given in Section 2.3.3 ("Summarize by group") at

[R] Heteroscedasticity in a percent-cover dataset

2016-04-15 Thread Lai Wen Ya Samantha
Hi, I am currently trying to do a GLMM on a dataset with percent cover of seagrass (dep. var) and a suite of explanatory variables including algal (AC) and epiphyte cover (EC), rainfall, temperature and sunshine hours. M2=glmer(SG~AC+EC+TP+SS+RF+(1|Location/fSi/fTr), family=binomial,data=data,n

Re: [R] Bug in by() function which works for some FUN argument and does not work for others

2016-04-15 Thread Akhilesh Singh
Dear All, Thanks for your help. However, I would like to draw your attention to the following: Actually, I was replicating the Example 2.3, using the dataset "brainsize.txt" given in Section 2.3.3 ("Summarize by group") at page 55, of a famous book "R by Example" written by "Jim Albert and Maria