[R] could not find function in mempry inside foreach loop

2016-04-12 Thread cheng huimin
I'm trying to use foreach function to do multicore computing in R. Error in FUN(train_adjmt, iter = missedmat[i, 1], iter2 = missedmat[i, : task 1 failed - "找不到对象'predictMatrix'" then I call function A in the console. The problem is I'm calling a function Posdef inside B that is defined in a

[R] could not find function in mempry inside foreach loop

2016-04-12 Thread cheng huimin
I'm trying to use foreach function to do multicore computing in R. A <-function() { foreach(i=1:10) %dopar% { B() }} then I call function A in the console. The problem is I'm calling a function ipredictMatrix inside B that is defined in another script file which I source.However

[R] No color in plotting

2016-04-12 Thread Michael Artz
Hi I am having a problem with plot () and ggplot (). When I call one of these functions, the plotting area starts to look as though it is working, but nothijg ever is visible. Unless it was a dendrogram. Woth the bar chart, the plotting area just had an x and y axis and nothing else. I tried a b

Re: [R] RWeka Error

2016-04-12 Thread ‪Rini John‬ ‪ via R-help
Hi,When I use any function of RWeka Package in Rstudio I get an error, "Error in .jnew (name): java.lang.ClassFormatError." can anyone guide me in this?Operation system used: Linux 64 bit (CentOS) Command used: >data("crude")>tdm <- TermDocumentMatrix(crude, control=list(tokenize = NGramTokenize

Re: [R] RWeka Error

2016-04-12 Thread ‪Rini John‬ ‪ via R-help
Hi,When I use any function of RWeka Package in Rstudio I get an error, "Error in .jnew (name): java.lang.ClassFormatError." can anyone guide me in this?Operation system used: Linux 64 bit (CentOS) Command used: >data("crude")>tdm <- TermDocumentMatrix(crude, control=list(tokenize = NGramTokenize

Re: [R] Adding Two-Headed Arrow in map legend

2016-04-12 Thread Jim Lemon
Hi Milu, My fault here. As I don't have the data to make the map and try out my suggestions I mixed up the x and y coordinates. Try this: par(xpd=TRUE) arrows(-19.75966,53,33.6,53,code=3) par(xpd=FALSE) Jim On Tue, Apr 12, 2016 at 10:11 PM, Miluji Sb wrote: > Hello Jim, > > Thanks again. I

Re: [R] error: contextstack overflow

2016-04-12 Thread John Kane
I've never seen the error mentioned before but see Brian Ripley's post https://stat.ethz.ch/pipermail/r-help/2008-March/157341.html. It looks like you are exceeding a limit. We probably should see some sample code and data. Please have a look at http://stackoverflow.com/questions/5963269/how-

[R] error: contextstack overflow

2016-04-12 Thread Mahmoud via R-help
Dear r users I've a loop that has 20 if else statements but it gave me the ""contextstack overflow"" error at statement 14 Is there any way to overcome this problem cause i'm forced to do that loop any help or recommendations please __ R-help@r-projec

Re: [R] Dissimilarity matrix and number clusters determination

2016-04-12 Thread Luisfo Chiroque via R-help
Dear Michael, Yes, AFAIK you are correctly reading the results. You can print elbow.obj$k to obtain the optimal number of clusters, and ‘visually’ you can check it plotting the variance vs #clusters plot(css.obj$k, css.obj$ev) HTH Best, Luisfo Chiroque PhD Student IMDEA Networks Institute http:

Re: [R] ggplot2

2016-04-12 Thread James Henson
Thanks, the stat="identity" worked. On Tue, Apr 12, 2016 at 3:34 PM, Huzefa Khalil wrote: > Hi James, > > If you want to specify the y-values, you need to use stat="identity" as > below: > > ggplot(probability, aes(x=Fertilizer, y=prob)) + > geom_bar(stat="identity", aes(fill=Treatment)) > > > b

Re: [R] ggplot2

2016-04-12 Thread Huzefa Khalil
Hi James, If you want to specify the y-values, you need to use stat="identity" as below: ggplot(probability, aes(x=Fertilizer, y=prob)) + geom_bar(stat="identity", aes(fill=Treatment)) best, huzefa On Tue, Apr 12, 2016 at 1:02 PM, James Henson wrote: > Dear R Community, > > Below is a problem

Re: [R] Documentation: Was -- identical() versus sapply()

2016-04-12 Thread ProfJCNash
If you generate the list of pages you're comfortable editing, the posse of folk who have already come forward can select one that we think can be improved and see how we get along with it. Sarah has already noted that Github offers wiki documentation. It is likely imperfect, but we can (and should

Re: [R] Documentation: Was -- identical() versus sapply()

2016-04-12 Thread William Michels via R-help
On Tue, Apr 12, 2016 at 9:44 AM, David Winsemius wrote: > > There need to be more worked examples, but those could easily be mined from > problems submitted as recorded in the R-help Archives and StackOverFlow. > This sounds like a great opportunity for R-users to contribute to the community

Re: [R] Documentation: Was -- identical() versus sapply()

2016-04-12 Thread Duncan Murdoch
On 12/04/2016 11:30 AM, ProfJCNash wrote: Thanks Duncan, for the offer to experiment. Can you suggest a couple of your pages that you think might need improvement? We might as well start with something you'd like looked at. I don't think I can. I don't intentionally write obscure documentatio

[R] ggplot2

2016-04-12 Thread James Henson
Dear R Community, Below is a problem with a simple ggplot2 graph. The code returns the error message below. Error: stat_count() must not be used with a y aesthetic. My code is below and the data is attached as a ‘text’ file. # Graph of the probabilities library(digest) library(DT) datatabl

Re: [R] Documentation: Was -- identical() versus sapply()

2016-04-12 Thread Duncan Murdoch
On 12/04/2016 12:44 PM, David Winsemius wrote: > On Apr 12, 2016, at 8:31 AM, Sarah Goslee wrote: > > I am very interested in such a distributed documentation editing > project, and have some thoughts on how to make it workable for both > volunteers and core members who would need to review. > >

Re: [R] Documentation: Was -- identical() versus sapply()

2016-04-12 Thread David Winsemius
> On Apr 12, 2016, at 8:31 AM, Sarah Goslee wrote: > > I am very interested in such a distributed documentation editing > project, and have some thoughts on how to make it workable for both > volunteers and core members who would need to review. > > I'm willing to lead or colead such a project,

Re: [R] Documentation: Was -- identical() versus sapply()

2016-04-12 Thread Sarah Goslee
I am very interested in such a distributed documentation editing project, and have some thoughts on how to make it workable for both volunteers and core members who would need to review. I'm willing to lead or colead such a project, if someone stepping up would be a useful first step, and I'm also

Re: [R] Documentation: Was -- identical() versus sapply()

2016-04-12 Thread ProfJCNash
Thanks Duncan, for the offer to experiment. Can you suggest a couple of your pages that you think might need improvement? We might as well start with something you'd like looked at. Then I'll ask if there are interested people and see what can be done about getting a framework set up to work on o

Re: [R] Correlation between package output

2016-04-12 Thread Sarah Goslee
Hi Fabio, Using the first example from ?dbFD ex1 <- dbFD(dummy$trait, dummy$abun) If you look at that help page, or at str(ex1), you'll see that the returned object is a list with named components. So, you can access the different indices just as you would access any other list. If that's confus

Re: [R] formula argument evaluation

2016-04-12 Thread Richard M. Heiberger
Would making it regular function %=>%, using "%" instead of quotes, work for you? On Tue, Apr 12, 2016 at 11:09 AM, Adrian Dușa wrote: > On Tue, Apr 12, 2016 at 2:08 PM, Duncan Murdoch > wrote: >> [...] >> >> It never gets to evaluating it. It is not a legal R statement, so the > parser signals

Re: [R] formula argument evaluation

2016-04-12 Thread Adrian Dușa
On Tue, Apr 12, 2016 at 2:08 PM, Duncan Murdoch wrote: > [...] > > It never gets to evaluating it. It is not a legal R statement, so the parser signals an error. > If you want to pass arbitrary strings to a function, you need to put them in quotes. I see. I thought it was parsed inside the funct

Re: [R] Documentation: Was -- identical() versus sapply()

2016-04-12 Thread Bert Gunter
FWIW: 1. I agree that this is an idea worth considering. Especially now that R has become so widely used among practitioners who are neither especially software literate nor interested in poring over R manuals (as I did when I first learned R). They have explicit tasks to do and just want to get t

Re: [R] Documentation: Was -- identical() versus sapply()

2016-04-12 Thread Duncan Murdoch
On 12/04/2016 9:21 AM, ProfJCNash wrote: "The documentation aims to be accurate, not necessarily clear." > I notice that none of the critics > in this thread have offered improvements on what is there. This issue is as old as documented things. With software it is particularly nasty, espec

Re: [R] formula argument evaluation

2016-04-12 Thread Keith Jewell
On 12/04/2016 11:24, Adrian Dușa wrote: I have a simple function such as: foo <- function(x) { call <- lapply(match.call(), deparse) testit <- capture.output(tryCatch(eval(x), error = function(e) e)) if (grepl("Error", testit)) { return(call$x) } } and I would like

Re: [R] [FORGED] Re: [FORGED] Re: identical() versus sapply()

2016-04-12 Thread Michael Dewey
Short comment inline On 12/04/2016 12:45, John Kane wrote: Thank you Rolf. fortune(350) was the link I was trying to remember. I believe! I believe in the documentation. It can be incredibly difficult to document something and unless one has an editor to read and 'try' to interpret the resu

[R] Documentation: Was -- identical() versus sapply()

2016-04-12 Thread ProfJCNash
"The documentation aims to be accurate, not necessarily clear." > I notice that none of the critics > in this thread have offered improvements on what is there. This issue is as old as documented things. With software it is particularly nasty, especially when we want the software to functio

Re: [R] [FORGED] Re: [FORGED] Re: identical() versus sapply()

2016-04-12 Thread Duncan Murdoch
On 11/04/2016 11:34 PM, Rolf Turner wrote: On 12/04/16 14:45, Duncan Murdoch wrote: On 11/04/2016 10:18 PM, Bert Gunter wrote: "The documentation aims to be accurate, not necessarily clear." !!! I hope that is not the case! Accurate documentation that is confusing is not very useful. I don'

[R] Dispatch issue in package check?

2016-04-12 Thread Szumiloski, John
Dear useRs, I am developing a package using RStudio and roxygen markup files. I have run into a problem while checking. The relevant function is a generic S3 statistical function modeled on t.test(), with methods. It returns an object of class "htest" etc. Here Is the (anonymized) relevant

Re: [R] [FORGED] Re: [FORGED] Re: identical() versus sapply()

2016-04-12 Thread John Kane
Thank you Rolf. fortune(350) was the link I was trying to remember. I believe! I believe in the documentation. It can be incredibly difficult to document something and unless one has an editor to read and 'try' to interpret the results the original writer may not realise just how opaque the

Re: [R] [FORGED] Re: identical() versus sapply()

2016-04-12 Thread John Kane
> -Original Message- > From: bgunter.4...@gmail.com > Sent: Mon, 11 Apr 2016 19:18:39 -0700 > To: murdoch.dun...@gmail.com > Subject: Re: [R] [FORGED] Re: identical() versus sapply() > > "The documentation aims to be accurate, not necessarily clear." > > !!! > > I hope that is not the

Re: [R] Adding Two-Headed Arrow in map legend

2016-04-12 Thread Jim Lemon
Hi Milu, There is a two-headed arrow on the image you sent, and it seems to be where you specified. Did you want it beneath the map, as: par(xpd=TRUE) arrows(-22,54.75,-22,74,code=3) par(xpd=FALSE) Jim On Tue, Apr 12, 2016 at 7:58 PM, Miluji Sb wrote: > Dear Jim, > > Thanks again! I do want the

Re: [R] formula argument evaluation

2016-04-12 Thread Duncan Murdoch
On 12/04/2016 6:24 AM, Adrian Dușa wrote: I have a simple function such as: foo <- function(x) { call <- lapply(match.call(), deparse) testit <- capture.output(tryCatch(eval(x), error = function(e) e)) if (grepl("Error", testit)) { return(call$x) } } and I would lik

[R] R integration with SAP-HANA and SQLScripting

2016-04-12 Thread Griffiths, Michael
Dear R forum, I am seeking relevant material that discusses processes and methods of incorporating R code into SAP-HANA. I would greatly appreciate links to any relevant literature. Background research on my part has only found the SAP-HANA R Integration Guide, and several short examples. If the

[R] formula argument evaluation

2016-04-12 Thread Adrian Dușa
I have a simple function such as: foo <- function(x) { call <- lapply(match.call(), deparse) testit <- capture.output(tryCatch(eval(x), error = function(e) e)) if (grepl("Error", testit)) { return(call$x) } } and I would like to detect a formula when x is not an object: #