Re: [R] adding a column to data frame solving the replacement problem

2016-02-24 Thread PIKAL Petr
Hi It seems to me that you misunderstand how objects (data.frames) in R work. see in line > -Original Message- > From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of hoda > rahmati via R-help > Sent: Wednesday, February 24, 2016 3:39 PM > To: r-help@r-project.org > Subject: [R

Re: [R] about Area Graphs

2016-02-24 Thread Bert Gunter
I am not sure this is the right place to get help on this. The manual was not actually part of R, I believe. If you do not succeed in getting help here, you might try contacting David Smith of Revolution Analytics (now part of Microsoft), who blogged on this some years ago. But there are very lik

Re: [R] [FORGED] Use of "quote" in Windows and Linux..

2016-02-24 Thread Berend Hasselman
> On 24 Feb 2016, at 22:12, Santosh wrote: > > Thanks all for your response. > I didn't realize I posted in HTML.. I just typed an email as I usually > do... how do I know whether it was sent in HTML? I had not changed any > settings to send out in HTML format.. > Seems like you got the impressi

Re: [R] KNN

2016-02-24 Thread Alnazer Elbedairy
Dear Jim thanks you for your kind help. KNN - is K- Nearest Neighbor, is a technique used in Machine Learning. attached you will find a CSV file dataset, my question is : use the attached Dataset, Use majority guessing technique to evaluate KNN ? this is the solution I came up with, but I didn't wo

[R] about Area Graphs

2016-02-24 Thread hui.chen
Dear Sir/Madam: Your web of "R Graphical Manual" is so wonderful! But the URL(http://rgm.ogalab.net/RGM) cannot be found now, may I ask for your new URL? Thx for your reply! Sincerely yours, Abigail Chen [[alternative HTML version deleted]] __

Re: [R] KNN

2016-02-24 Thread Jim Lemon
Hi Alnazar, I looked at your question yesterday and was unable to find what a "majority guessing" function is. I think it may be related to the "Pandemonium" model of decision making, but that doesn't get me very far. Could you give us a hint as to what this function is? Jim On Wed, Feb 24, 2016

Re: [R] subsetting

2016-02-24 Thread Val
Thank you for the info. I did solve it using unlist lapply strsplit functions. On Wed, Feb 24, 2016 at 9:31 PM, Bert Gunter wrote: > Have you gone through any R tutorials yet? I didn't entirely > understand your question (and so cannot answer), but this sounds like > a basic subsetting/data wr

Re: [R] subsetting

2016-02-24 Thread Ryan Derickson
A combination of subsetting and ?substr should get you close to a solution. If the middle sequence you referenced isn't always the same distance from the first character, you may have to involve regular expressions to find "the middle". On Wednesday, February 24, 2016, Bert Gunter wrote: > Have

Re: [R] subsetting

2016-02-24 Thread Bert Gunter
Have you gone through any R tutorials yet? I didn't entirely understand your question (and so cannot answer), but this sounds like a basic subsetting/data wrangling task that you should know how to do if you have gone through a basic tutorial or two. See also ?subset, ?"[" (basic indexing) and pos

[R] subsetting

2016-02-24 Thread Val
Hi all, One of the the columns of a data frame has a value such like S-2001-yy S-2004-xx F-2007-SS and so on based on this column (variable) I want subset a data frame where the middle value of this variable is between 2001 to 2004. THE END RESULT THE DATA FRAME WILL BE THIS. AAA

[R] png: cannot load any more object with static TLS

2016-02-24 Thread Samuel Meyer
Hi all, I have an issue running png after loading various packages. After running library(drc) library(RCurl) library(XLConnect) library(ROracle) png("test.png") dev.off() The file fails to write, and I get Warning messages: 1: In png("test.png") : unable to load shared object '/usr/lib64/R/l

Re: [R] [FORGED] Use of "quote" in Windows and Linux..

2016-02-24 Thread Santosh
Thanks all for your response. I didn't realize I posted in HTML.. I just typed an email as I usually do... how do I know whether it was sent in HTML? I had not changed any settings to send out in HTML format.. Seems like you got the impression based on the HTML tag like message of "simpleError"...

Re: [R] [FORGED] Use of "quote" in Windows and Linux..

2016-02-24 Thread Ista Zahn
On Wed, Feb 24, 2016 at 3:47 PM, Rolf Turner wrote: > > (1) Do not post in html. > > (2) This is the R-help forum, not the Rstudio help forum. > > (3) The call > > a1 <- quote(ID) > > works just fine under R (not Rstudio) on my Linux box. Works fine on my Linux machine too, even in Rstudio.

Re: [R] [FORGED] Use of "quote" in Windows and Linux..

2016-02-24 Thread Rolf Turner
(1) Do not post in html. (2) This is the R-help forum, not the Rstudio help forum. (3) The call a1 <- quote(ID) works just fine under R (not Rstudio) on my Linux box. cheers, Rolf Turner -- Technical Editor ANZJS Department of Statistics University of Auckland Phone: +64-9-373-7599 ext

Re: [R] how to split and use notation fro stacked data

2016-02-24 Thread Nordlund, Dan (DSHS/RDA)
I will suggest that you read the documentation on t.test. ?t.test Dan Daniel Nordlund, PhD Research and Data Analysis Division Services & Enterprise Support Administration Washington State Department of Social and Health Services > -Original Message- > From: R-help [mailto:r-help-bou

Re: [R] readRDS problem

2016-02-24 Thread Rolf Turner
On 25/02/16 00:11, Erich Neuwirth wrote: ?data will show you that data is a reserved word! That is simply not true. There is no mention in help for data of "data" being a reserved word. Moreover, if "data" *were* a reserved word " <- " wouldn't work either. Compare: data <- 42 # No pr

Re: [R] how to split and use notation fro stacked data

2016-02-24 Thread Bert Gunter
Sounds like a homework problem. If so, this list has a "no homework" policy and you should ask your professor or the TA for help. Cheers, Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "

Re: [R] RSQLite: rounding

2016-02-24 Thread Leonardo Miceli
Hi Sarah I didn't know the function dput! I checked the formatting issue by doing simple arithmetic operations on the data. But with the dput function these issue turned much more clear. Here goes the result... I just change the "head" by the "tail" function, so we must have exactly the same dat

[R] adding a column to data frame solving the replacement problem

2016-02-24 Thread hoda rahmati via R-help
Hi all,  I have a data set (mydata) containing 471 variables. One of the columns looks as below  $ Sequence : Factor w/ 3 levels "","%Seq%gre",..: 2 2 2 2 2 2 2 2 2 2 ...  sequence contains %Seq%gre and %Seq%tse and I extract only %Seq%tse and add it to my variables and plot a scatterplot of m

[R] how to split and use notation fro stacked data

2016-02-24 Thread Joanna Nguyen
I have a data set as below "temperature" "gender" "hr" 96.3 1 70 96.7 1 71 96.9 1 74 96.4 2 69 96.7 2 62 96.8 2 75 Gender code (1) means males and Gender code (2) means females. I have to split the data by gender and then perform a* two-sample tes*t to see whether the population means are equival

[R] Use of "quote" in Windows and Linux..

2016-02-24 Thread Santosh
Dear Rxperts.. I noticed a puzzling behavior of 'quote' in Linux and Windows environment based RStudio.. In Linux based RStudio , a1 <- quote(ID) The error message I get is: I dont get any error message when I do the same in Windows 7 based RStudio.. Could you please suggest how to use

Re: [R] Order output list od TukeyHSD function by "p adj"

2016-02-24 Thread Sergio Fonda
Thanks for your very useful help! It's working on my data (apply() to a list of lists ) All the best Sergio 2016-02-24 17:02 GMT+01:00 David L Carlson : > hsd.fit is list containing 1 element, a matrix called "wool:tension". It > will be simpler if you extract the matrix and then use order(

Re: [R] Order output list od TukeyHSD function by "p adj"

2016-02-24 Thread David L Carlson
hsd.fit is list containing 1 element, a matrix called "wool:tension". It will be simpler if you extract the matrix and then use order() to get the matrix sorted by p adj: > table <- hsd.fit[["wool:tension"]] > table[order(table[, 'p adj']), ] difflwr uprp adj A

Re: [R] Sorting in trees problem

2016-02-24 Thread Bert Gunter
"%in%" is a wrapper for match(), which uses hashing I believe (correction welcome!),and so is generally very fast. See ?Rprof for profiling R code to get timings. (Haven't used it myself, so not sure how useful it would be for this situation). -- Bert Bert Gunter "The trouble with having an o

[R] Sorting in trees problem

2016-02-24 Thread Axel Urbiz
Hello, As decision trees require sorting the variable used for splitting a given node, I'm trying to avoid having this recurrent sorting by only sorting all numeric variable first (and only once). My attempt in doing this is shown in "Solution 2" below, but although I get the desired result I thi

Re: [R] Double AND within an IF statement

2016-02-24 Thread Bert Gunter
Yes! -- Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Wed, Feb 24, 2016 at 8:31 AM, Duncan Murdoch wrote: > On 24/02/2016 11:27 AM, Bert Gunter wrote:

Re: [R] Fwd: about dowloading a package.

2016-02-24 Thread Michael Dewey
Dear Carlos On 24/02/2016 11:11, Carlos Gracida Juarez wrote: Good morning, I have an issue with my computer in order to download a package. I've tried to download the "mosaicData" and by writing the command and using the install packages tab, and in the first gives ma a warning indication that

Re: [R] Double AND within an IF statement

2016-02-24 Thread Duncan Murdoch
On 24/02/2016 11:27 AM, Bert Gunter wrote: I would have assumed that age, etc. were vectors; but that's why I said "almost" surely. Okay, so you were confusing if () with ifelse(). Duncan Murdoch -- Bert Bert Gunter "The trouble with having an open mind is that people keep coming along a

Re: [R] Double AND within an IF statement

2016-02-24 Thread Bert Gunter
I would have assumed that age, etc. were vectors; but that's why I said "almost" surely. -- Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Wed, Feb 24,

Re: [R] Double AND within an IF statement

2016-02-24 Thread Duncan Murdoch
On 24/02/2016 11:18 AM, Bert Gunter wrote: Almost surely no. You are confusing "&&" with "&" ?"&" I think Bob had it right... Duncan Murdoch -- Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Bre

Re: [R] Double AND within an IF statement

2016-02-24 Thread Bert Gunter
Almost surely no. You are confusing "&&" with "&" ?"&" -- Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Wed, Feb 24, 2016 at 8:10 AM, Robert Sherry

Re: [R] Double AND within an IF statement

2016-02-24 Thread Robert Sherry
This should work: if ( age > 4 && age < 8 && infection > 0 ) replacement = 2 Bob On 2/24/2016 7:08 AM, Polychronis KOSTOULAS wrote: Hi there, apologies if this is easy. I want to write this condition: If age is more than 4 years and less or equal to 8 years and infection is positive the

Re: [R] issue -- packages unavailable for R version -- 3.2.3

2016-02-24 Thread Bert Gunter
?update.packages Cheers, Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Tue, Feb 23, 2016 at 11:47 PM, Sandeep Singha wrote: > Hi, > > I have newly in

Re: [R] KNN

2016-02-24 Thread David L Carlson
Your question is too vague. What do you know about R? What do you know about KNN? What have you tried so far? You need to teach yourself enough about R to ask a more specific question. To get started, read some of these: Contributed Documentation (https://cran.r-project.org/other-docs.html) * "U

Re: [R] Problems with the deSolve package

2016-02-24 Thread Abdel Halloway
Okay, so if delta is high (say 0.5), the betas have to be extremely high (around 5) to get good results. If delta is around 0.1, you can get good results with smaller betas. On Wed, Feb 24, 2016 at 9:21 AM, Abdel Halloway wrote: > I think your delta is too high. If you reduce your delta (0.1 for

Re: [R] Problems with the deSolve package

2016-02-24 Thread Abdel Halloway
I think your delta is too high. If you reduce your delta (0.1 for example), you should be able to get good results. On Mon, Feb 22, 2016 at 3:37 AM, Alexandre Suire wrote: > Hello Abdel, > > I'm trying to model the spread of two viruses between different states, > which are i1 and i2, and i12 if

Re: [R] RSQLite: rounding

2016-02-24 Thread Sarah Goslee
How did you "check it out"? I still suspect a formatting issue. Please use dput() to provide a bit of data from each, eg dput(head(x1)) dput(head(x2)) Sarah On Tue, Feb 23, 2016 at 5:31 PM, Leonardo Miceli wrote: > > Does anybody here had any problem with rounding using RSQLite? > > I have a qu

Re: [R] issue -- Packages unavailable for R version 3.2.3

2016-02-24 Thread boB Rudis
>'It's not unlikely that you will need a copy of "Writing R Extensions" at >hand.' + a few bottles of Scotch. It might be worth approaching rOpenSci https://ropensci.org/ to take over resurrection/maintenance of this. But, it seems others are in your predicament: https://www.researchgate.net/p

Re: [R] issue -- Packages unavailable for R version 3.2.3

2016-02-24 Thread peter dalgaard
Hmm, well I probably wouldn't suggest that you roll 3 years worth of bugs in R back in, but it obviously is a conundrum, whether to do that or to fix issues that have cropped up in a package over three years. The author seems to have a beef with CRAN (we saw an outburst less than a week ag

Re: [R] Loading large .pxt and .asc datasets causes issues.

2016-02-24 Thread Torvon
This is incredibly helpful, thank you all! On 24 February 2016 at 04:02, Anthony Damico wrote: > hi eiko, LaF is incompatible with survey data, that road is a dead-end. > this code below will painlessly load brfss into R, review the link douglas > sent for analysis examples and change `years.to.

Re: [R] issue -- Packages unavailable for R version 3.2.3

2016-02-24 Thread boB Rudis
Will you be able to fix the issues that crop up (or even notice the issues) for these unsupported packages? (There _is_ a reason they aren't in CRAN anymore.) That particular one (which is, indeed, archived in CRAN) also depends on Rstem, which is also archived on CRAN, and now (according to CRAN)

Re: [R] Trying to load a FORTRAN dll but unable

2016-02-24 Thread MAURICE Jean - externe
Hi Murdoch, I solved my problem ! In fact, the problem is coming from Intel’s FORTRAN and a little from R : You must tell FORTRAN that parameters are sent by reference and R can only work with routine names in lower case and ending with ‘_’ (and this underscore must not be written in the .for

Re: [R] issue -- packages unavailable for R version -- 3.2.3

2016-02-24 Thread Ista Zahn
Posting the same question in the space of a few hours is considered by many to be very rude behavior. I have already replied to your previous message. --Ista On Feb 24, 2016 8:41 AM, "Sandeep Singha" wrote: > Hi, > > I have newly installed R version 3.2.3 and experiencing an issue where the > pa

Re: [R] Normalization in R

2016-02-24 Thread Sergio Fonda
If you intend "standardization, use scale(x, center = TRUE, scale = TRUE), center for zero mean scale for SD=1 Best regards, Sergio 2016-02-24 8:22 GMT+01:00 Alnazer Elbedairy : > Dear all > anyone know the function or syntax to get the Normalization for Data ? > thanks > > [[altern

Re: [R] Double AND within an IF statement

2016-02-24 Thread PIKAL Petr
Hi if((age>4 & age<8) & (infection >0)) a<-2 Wait, are you sure you are using R? Maybe you want ifelse. Cheers Petr > -Original Message- > From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of > Polychronis KOSTOULAS > Sent: Wednesday, February 24, 2016 1:09 PM > To: r-help@

Re: [R] Normalization in R

2016-02-24 Thread PIKAL Petr
Hi What do you mean by normalisation? Something like http://stats.stackexchange.com/questions/70801/how-to-normalize-data-to-0-1-range or http://stackoverflow.com/questions/15215457/standardize-data-columns-in-r or https://stat.ethz.ch/pipermail/r-help//2012-October/336676.html Cheers Petr

[R] issue -- packages unavailable for R version -- 3.2.3

2016-02-24 Thread Sandeep Singha
Hi, I have newly installed R version 3.2.3 and experiencing an issue where the packages that I had been using in previous release aren't compatible in the latest release. I need you help to suggest how we could force the installation even if its not supported or what is the workaround to move

[R] Double AND within an IF statement

2016-02-24 Thread Polychronis KOSTOULAS
Hi there, apologies if this is easy. I want to write this condition: If age is more than 4 years and less or equal to 8 years and infection is positive then replacement is 2. Can you help me the double END? Thanks, Polychronis __ R-help@r-projec

[R] Fwd: about dowloading a package.

2016-02-24 Thread Carlos Gracida Juarez
Good morning, I have an issue with my computer in order to download a package. I've tried to download the "mosaicData" and by writing the command and using the install packages tab, and in the first gives ma a warning indication that the carpet of destiny is not rewritable, and in the second, asks

[R] RSQLite: rounding

2016-02-24 Thread Leonardo Miceli
Does anybody here had any problem with rounding using RSQLite? I have a query which return around 100 thousands records of double precision numeric values. The query returns the numbers with 1 digit precision. But when I run the same query but constrains the number of recorded values returned,

[R] Normalization in R

2016-02-24 Thread Alnazer Elbedairy
Dear all anyone know the function or syntax to get the Normalization for Data ? thanks [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE

Re: [R] Reading a datetime vector

2016-02-24 Thread D Wolf via R-help
In addition to my previous message, DF_extract_clean.R is the program in the dropbox folder that I am currently working on. Doug On Tuesday, February 23, 2016 4:02 AM, Jim Lemon wrote: Hi Doug,It is difficult for us to work out what is happening as we don't have access to a toy data s

Re: [R] mvProbit error message

2016-02-24 Thread Betty Betty
sorry for the confusion. I used y1,y2, instead of the real variable names just for emailing purpose (to forward my question in a more clear way). Tree, nothing...are the real variable names in my data set and i actually used Result<-myProbit(cbind(tree,nothing)~x1+x2..,data=mydata) On

[R] KNN

2016-02-24 Thread Alnazer
How I can use majority guessing function to evaluate KNN, if I have data saved in CSV file Alnazer Elbedairy __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting gu

Re: [R] R 3.2.3 on Win8; mkdir command produces error

2016-02-24 Thread HEATHER MICHEL via R-help
I found another MOOC that teaches R at a more basic level than the one I am currently taking. Actually, it was suggested by a classmate who discovered it in her search for how to accomplish this homework assignment. It pointed me to  http://www.statmethods.net/interface/workspace.html which has a

Re: [R] issue -- Packages unavailable for R version 3.2.3

2016-02-24 Thread Ista Zahn
Installing unsupported packages is usually not a good idea (there is a reason they were removed...). But if you must: install.packages("devtools") install_version("sentiment", '0.2') Best, Ista On Wed, Feb 24, 2016 at 2:49 AM, Sandeep Rana wrote: > Hi, > > I have newly installed R version 3.2.

Re: [R] Order output list od TukeyHSD function by "p adj"

2016-02-24 Thread Sergio Fonda
Thank you Jim also for introducing a shorter data frame. However the HSD output I deal with is derived from a crossing factors condition. Could you kindly explain how could I sort results obtained from a fm1 <- aov(breaks ~ wool * tension, data = warpbreaks) hsd.fit<-TukeyHSD(fm1, "wool:tension",

Re: [R] readRDS problem

2016-02-24 Thread Duncan Murdoch
On 24/02/2016 4:26 AM, Sigbert Klinke wrote: Hi, I have two scripts, one creates a data structure (a list of data frames + some attributes) and saves it via saveRDS. The second script reads the RDS file (outside of any function) and data <- readRDS (name) works, but data <<- readRDS (name)

Re: [R] readRDS problem

2016-02-24 Thread Michael Dewey
You need to do help("<-") for a full explanation but in brief when you do <- it assigns locally and since it could not find data locally it makes it for you but when you do <<- it tries its very best to find data somewhere. Since data is the name of a function which the authors of R have locked

Re: [R] readRDS problem

2016-02-24 Thread Erich Neuwirth
?data will show you that data is a reserved word! > On 24 Feb 2016, at 11:02, Sigbert Klinke wrote: > > Hi, > > thanks, using > > test <<- readRDS (name) > > it worked. But why? > > Best Sigbert > > Am 24.02.2016 um 10:39 schrieb Michael Dewey: >> Try calling it something other than data.

Re: [R] mvProbit error message

2016-02-24 Thread PIKAL Petr
Hi I am not an expert in this area. Your error says > However, i get an error message "...Error in > mvProbit(cbind(y1,y2,y3,y4,y5) ~:all dependent variables must be either > 0,1,TRUE, or FALSE) str(mydata) tells you that you have factors. $ tree : Factor w/ 2 levels "FALSE","TRUE": 2

Re: [R] readRDS problem

2016-02-24 Thread Sigbert Klinke
Hi, thanks, using test <<- readRDS (name) it worked. But why? Best Sigbert Am 24.02.2016 um 10:39 schrieb Michael Dewey: > Try calling it something other than data. > > On 24/02/2016 09:26, Sigbert Klinke wrote: >> Hi, >> >> I have two scripts, one creates a data structure (a list of data fra

[R] first steps to build a FORTRAN DLL used by R

2016-02-24 Thread MAURICE Jean - externe
Hi, I am a fortran developper, freelance, hired by a huge company to transform R calculations to FORTRAN. I am discovering R. Few years ago someone built FORTRAN dll using Lahey Fortran (perhaps only to test his programs) and gfortran. I found two .bat files, one for Lahey : ECHO compilation for

Re: [R] readRDS problem

2016-02-24 Thread Michael Dewey
Try calling it something other than data. On 24/02/2016 09:26, Sigbert Klinke wrote: Hi, I have two scripts, one creates a data structure (a list of data frames + some attributes) and saves it via saveRDS. The second script reads the RDS file (outside of any function) and data <- readRDS (nam

[R] readRDS problem

2016-02-24 Thread Sigbert Klinke
Hi, I have two scripts, one creates a data structure (a list of data frames + some attributes) and saves it via saveRDS. The second script reads the RDS file (outside of any function) and data <- readRDS (name) works, but data <<- readRDS (name) creates the error Error: cannot change value o

Re: [R] mvProbit error message

2016-02-24 Thread PIKAL Petr
Hi Keep your reply to rhelp list. Others can come with better/more appropriate solution. Pardon me, but you used Result<-mvProbit( cbind(y1,y2,y3,y4,y5) ~ x1+x2+x3+..+.x11,data=mydata) but in mydata there are variables tree and nothing (according what you did tell us). So I am rather con

Re: [R] Trying to load a FORTRAN dll but unable

2016-02-24 Thread MAURICE Jean - externe
Hi Murdoch, is.loaded is now working but the routine I call has a bug so I have to rebuilt it ! I am posting a new question on this mailing list ... Many thanks for your help Jean Ce message et toutes les pièces jointes (ci-après le 'Message') sont établis à l'intention exclusive des destin