Re: [R] Error opening SHP file

2016-01-21 Thread boB Rudis
Agreed with the others. After finding that shapefile and getting it to work you are definitely not in the proper working directory. On Thu, Jan 21, 2016 at 8:40 PM, David Winsemius wrote: > >> On Jan 21, 2016, at 4:39 PM, Amoy Yang via R-help >> wrote: >> >> Any advice for the following errors?

Re: [R] Error opening SHP file

2016-01-21 Thread David Winsemius
> On Jan 21, 2016, at 4:39 PM, Amoy Yang via R-help > wrote: > > Any advice for the following errors? > state.map <- readShapeSpatial("maps/st24_d00.shp") > Error in getinfo.shape(fn) : Error opening SHP file What does list.files('maps') return? Is there a 'st24_d00.shp' value in there? --

Re: [R] Error opening SHP file

2016-01-21 Thread Jim Lemon
Hi Amoy, Another mystery question. I should have pursued parapsychology. That error statement is usually followed by one noting that the file specified cannot be found. Today's guess is that the R working directory: getwd() did not have a "maps" directory below it. Jim On Fri, Jan 22, 2016 at

Re: [R] ggplot2 - specific y axis scale for each time series in facet grind

2016-01-21 Thread Jeff Newmiller
> What is the command to make for > each plot specific y axis scale? Read the documentation for ?facet_grid... in particular the scales argument. -- Sent from my phone. Please excuse my brevity. On January 21, 2016 7:15:46 AM PST, Maxim Fomin wrote: >Dear R users, > >I have a (melted) data fr

[R] Error opening SHP file

2016-01-21 Thread Amoy Yang via R-help
Any advice for the following errors? state.map <- readShapeSpatial("maps/st24_d00.shp") Error in getinfo.shape(fn) : Error opening SHP file [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, se

Re: [R] tcltk: write '[' and ']' in a table cell

2016-01-21 Thread Dalthorp, Daniel
Many thanks, Peter. Simple, works perfectly, and nigh on impossible to figure out without your help. To summarize...in my example, I need to do: junk[[0,0]] <- as.tclObj(lbl,drop=T) # instead of junk[[0,0]]<-lbl It works for spaces, brackets, parentheses, and all manner of special characters.

Re: [R] Histogram with a wide range of numbers.

2016-01-21 Thread Jim Lemon
Hi Sema, I trimmed your file to the first 220 lines. ads<-read.table("all_data_scor.txt",header=TRUE,sep="\t") ads.tab<-table(cut(all_data_scor[,2],breaks=c(0,1e-100,1e-10,1e-1,1,10))) barplot(adt.tab) This gives you a basic idea of what can be done. If this is not clear, ask again. Jim On Thu

Re: [R] tcltk tkwidget(..."table")

2016-01-21 Thread Dalthorp, Daniel
> Once you're up to speed on those issues... Any suggestions for getting up to speed on those issues? On Thu, Jan 21, 2016 at 11:46 AM, peter dalgaard wrote: > > > On 21 Jan 2016, at 00:25 , Dalthorp, Daniel wrote: > > > > Thanks, Peter. > > > > I'm sure that's right, but it requires knowin

Re: [R] R editor for Mac

2016-01-21 Thread Berend Hasselman
> On 21 Jan 2016, at 19:06, Duncan Murdoch wrote: > > On 20/01/2016 1:28 PM, Duncan Murdoch wrote: >> On 20/01/2016 1:22 PM, Christofer Bogaso wrote: >> > Hi, >> > >> > Could you please suggest a good R editor for Mac OS X (10.7.5) >> > Previously my operating system was Windows and there I used

Re: [R] R editor for Mac

2016-01-21 Thread William Michels via R-help
Run Atom with the language-r and r-exec packages: "A language description and snippets for R" https://atom.io/packages/language-r "Send R code to various consoles" https://atom.io/packages/r-exec On Thu, Jan 21, 2016 at 9:54 AM, boB Rudis wrote: > Here you go Ista: https://atom.io/packages/rep

Re: [R] tcltk: write '[' and ']' in a table cell

2016-01-21 Thread peter dalgaard
“Right now I’m having amnesia and déjà vu at the same time. I think I’ve forgotten this before.” ― Steven Wright Check if this might be the same issue as the one of embedded spaces in https://stat.ethz.ch/pipermail/r-help/2009-January/378558.html -pd > On 21 Jan 2016, at 02:12 , Dalthorp, Dani

Re: [R] R editor for Mac

2016-01-21 Thread Ista Zahn
On Thu, Jan 21, 2016 at 12:54 PM, boB Rudis wrote: > Here you go Ista: https://atom.io/packages/repl (Atom rly isn't bad > for general purpose data sci needs, I still think RStudio is the best > environment for working with R projects). Thanks Bob, the Atom REPL thingy is nice. I'm sticking with

Re: [R] tcltk tkwidget(..."table")

2016-01-21 Thread peter dalgaard
> On 21 Jan 2016, at 00:25 , Dalthorp, Daniel wrote: > > Thanks, Peter. > > I'm sure that's right, but it requires knowing: (1) that there's something > called the "width subcommand", and (2) how to format the call to that > command/subcommand. > Yes, there's a fair amount of that going on

Re: [R] ggplot2 - specific y axis scale for each time series in facet grind

2016-01-21 Thread Maxim Fomin
Thanks, that worked. Best regards, Maxim 2016-01-21 22:29 GMT+03:00 Ulrik Stervbo : > > You can try facet_grid(variable~., scales = "free_y") > > On Thu, 21 Jan 2016 at 19:29 Maxim Fomin wrote: >> >> Dear R users, >> >> I have a (melted) data frame of several metal prices from 1980. I want to >>

Re: [R] ggplot2 - specific y axis scale for each time series in facet grind

2016-01-21 Thread Ulrik Stervbo
You can try facet_grid(variable~., scales = "free_y") On Thu, 21 Jan 2016 at 19:29 Maxim Fomin wrote: > Dear R users, > > I have a (melted) data frame of several metal prices from 1980. I want to > make a time series plot for each metal price. By default ggplot constructs > single plot for all p

[R] ggplot2 - specific y axis scale for each time series in facet grind

2016-01-21 Thread Maxim Fomin
Dear R users, I have a (melted) data frame of several metal prices from 1980. I want to make a time series plot for each metal price. By default ggplot constructs single plot for all prices. Adding +facet_grid(variable~.) makes for each metal price a plot, but now there is another problem - scale

[R] question for bayesian regression

2016-01-21 Thread Derya Sahin
Hello, I don't have much knowledge about how to use JAGS to do bayesian regression, I have seen several examples but my data is left censored and I am not sure how to construct the likelihood function, if someone could post a sample JAGS code for bayesian regression for left-censored data, that

Re: [R] strange answer when using 'aggregate()' with a formula

2016-01-21 Thread Chel Hee Lee
I appreciate your kind guidance! I did not read the manual carefully (it's my fault). Thank you so much, Prof. John Fox! Chel Hee Lee On 01/21/2016 12:52 AM, Fox, John wrote: Dear Chel Hee Lee, With the formula method, the default na.action is na.omit; thus, aggregate(y~grp, data=tmp, fun

Re: [R] R editor for Mac

2016-01-21 Thread boB Rudis
Aye. You can make source/editor windows consume the entire area or have them as separate windows and can define a consistent line-ending vs platform native (I run RStudio Preview and [sometimes] dailies and can confirm these are in there). The addition of full R (C/C++/HTML/javascript/etc) code dia

Re: [R] R editor for Mac

2016-01-21 Thread Duncan Murdoch
On 20/01/2016 1:28 PM, Duncan Murdoch wrote: On 20/01/2016 1:22 PM, Christofer Bogaso wrote: > Hi, > > Could you please suggest a good R editor for Mac OS X (10.7.5) > Previously my operating system was Windows and there I used Notepad++, > I really had very nice experience with it. However I don

Re: [R] R editor for Mac

2016-01-21 Thread boB Rudis
Here you go Ista: https://atom.io/packages/repl (Atom rly isn't bad for general purpose data sci needs, I still think RStudio is the best environment for working with R projects). On Thu, Jan 21, 2016 at 12:48 PM, Ista Zahn wrote: > On Jan 21, 2016 12:01 PM, "Philippe Massicotte" > wrote: >> >>

Re: [R] R editor for Mac

2016-01-21 Thread Ista Zahn
On Jan 21, 2016 12:01 PM, "Philippe Massicotte" wrote: > > On 01/20/2016 07:22 PM, Christofer Bogaso wrote: >> >> Hi, >> >> Could you please suggest a good R editor for Mac OS X (10.7.5) >> Previously my operating system was Windows and there I used Notepad++, >> I really had very nice experience

Re: [R] trimmed mean and Winsorized mean

2016-01-21 Thread Bert Gunter
But DO NOT DO ANY OF THIS. See the Robust Task View on CRAN and use the functionality of the robust or robustbase package. Trimmed/winsorized means are ancient technology; there is much better available today (and for the last 40 or so years, in fact). Cheers, Bert Bert Gunter "The trouble wit

Re: [R] Survival::coxph (clogit), survConcordance vs. summary(fit) concordance

2016-01-21 Thread Joe Ceradini
Thanks Terry! I thought that since I was providing survConcordance with the model object that the same formula would be applied. But I was obviously wrong. I just ran survConcordance with the addition of the strata argument, as you suggested, and got the same answer as summary(fit)with the sam

Re: [R] Survival::coxph (clogit), survConcordance vs. summary(fit) concordance

2016-01-21 Thread Therneau, Terry M., Ph.D.
I read the digest form which puts me behind, plus the last 2 days have been solid meetings with an external advisory group so I missed the initial query. Three responses. 1. The clogit routine sets the data up properly and then calls a stratified Cox model. If you want the survConcordance ro

Re: [R] Fwd:

2016-01-21 Thread David L Carlson
Assuming Michael is correct, you can use setdiff(): > set.seed(42) > current <- sample.int(4500, 4495) # All but 5 numbers used > setdiff(1:4500, current) # Find which numbers are left [1] 905 1252 2508 3192 4484 - David L Carlson Department of Anthropology Te

Re: [R] trimmed mean and Winsorized mean

2016-01-21 Thread John Kane
I think this depends on how well google knows you. It took me about 6 months when I first starting using R just to get google to figure out what r meant. I was getting a lot if information on how to do correlations before that. "winsorized mean in r statistics" sounds safer for a new R user

Re: [R] trimmed mean and Winsorized mean

2016-01-21 Thread PIKAL Petr
Hi Out of curiosity I tried to find how precise is searching for such simple task on internet. This was my question in google winsorized mean in r Position 6 http://finzi.psych.upenn.edu/library/SciencePo/html/winsor.mean.html Position 5 http://www.statisticalanalysisconsulting.com/measures-

Re: [R] trimmed mean and Winsorized mean

2016-01-21 Thread Michael Dewey
Dear Muhammad You could try an internet search which should lead you to several packages on CRAN which meet your need for Winsorisation. I used winsor cran but it may depend on what Google knows about you. On 21/01/2016 09:50, Muhammad Kashif wrote: Dear respected group members who we cal

Re: [R] Fwd:

2016-01-21 Thread Michael Dewey
Hello Maryam See below On 20/01/2016 21:26, maryam firoozi via R-help wrote: Hello, i made a population about 4500 individual. So you mean nearly 4500, not exactly 4500? this has two sex(female and male).they had pedigree. i wanted to enter new indiviual but their ID of indiviual mustnot be

Re: [R] trimmed mean and Winsorized mean

2016-01-21 Thread Ivan Calandra
Regarding the trimmed mean, take a look at the arguments of the function mean(): ?mean No idea about the Winsorized mean, though. HTH, Ivan -- Ivan Calandra, PhD University of Reims Champagne-Ardenne GEGENAA - EA 3795 CREA - 2 esplanade Roland Garros 51100 Reims, France +33(0)3 26 77 36 89 iva

[R] trimmed mean and Winsorized mean

2016-01-21 Thread Muhammad Kashif
Dear respected group members who we calculate trimmed and Winsorized mean of data. can we calculate directly of any latest package is available for their calculation. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -