Re: [R] reading files with name columns and row columns

2015-09-02 Thread shawin
dear William , I have an issue with R code which is : FCP<-as.matrix(sapply(FCPval,as.numeric)) for (i in 1:rowN){if (FCP$FC[i] >= 1.5 & FCP$FC[i]<=-1.5 & FCP$p[i]<=0.05){ dfrmPFC=data.frame(matrix(Fc=FC,p=p))} } the error is :Error in FCP$FC : $ operator is invalid for atomic vectors could you

Re: [R] reading files with name columns and row columns

2015-09-02 Thread shawin
also the header =0 On Wed, Sep 2, 2015 at 11:52 PM, Shawin Karim wrote: > make row.name=0 instead to 1 > > On Wed, Sep 2, 2015 at 11:07 PM, Bogdan Tanasa [via R] < > ml-node+s789695n4711774...@n4.nabble.com> wrote: > >> Dear all, >> >> would appreciate a piece of help with a simple question: I a

Re: [R] reading files with name columns and row columns

2015-09-02 Thread Bogdan Tanasa
that is great, thank you Bill for time and help ;) ! On Wed, Sep 2, 2015 at 4:36 PM, William Dunlap wrote: > y <- as.matrix(read.table("FILE_NAME",header=T,row.names=1)) > colnames(y) <- gsub("X","", colnames(y)) > > Use read.table's check.names=FALSE argument so it won't mangle > the column

Re: [R] reading files with name columns and row columns

2015-09-02 Thread William Dunlap
y <- as.matrix(read.table("FILE_NAME",header=T,row.names=1)) colnames(y) <- gsub("X","", colnames(y)) Use read.table's check.names=FALSE argument so it won't mangle the column names instead of trying to demangle them with gsub() afterwards. E.g., txt <- " 50% 100%\nA 5 8\nB 13

Re: [R] reading files with name columns and row columns

2015-09-02 Thread Bogdan Tanasa
Thanks, Bert ! I solved the situation in the meanwhile, by using : y <- as.matrix(read.table("FILE_NAME",header=T,row.names=1)) colnames(y) <- gsub("X","", colnames(y)) On Wed, Sep 2, 2015 at 3:59 PM, Bert Gunter wrote: > Please read the Help file carefully before posting: > > "read.table is

Re: [R] reading files with name columns and row columns

2015-09-02 Thread Bert Gunter
Please read the Help file carefully before posting: "read.table is not the right tool for reading large matrices, especially those with many columns: it is designed to read data frames which may have columns of very different classes. Use scan instead for matrices." But the answer to your questio

Re: [R] Converting CSV file to numeric and calculate ttest

2015-09-02 Thread shawin
p value should be 0.3 On Wed, Sep 2, 2015 at 8:07 PM, Navien [via R] < ml-node+s789695n4711770...@n4.nabble.com> wrote: > I have a csv file i convert it to numeric value , then i apply t-test , > but t-test result is not correct: please could you guide me. the data : > ID x1 x2 x3 x4 x5 x6 x7 x8

[R] reading files with name columns and row columns

2015-09-02 Thread Bogdan Tanasa
Dear all, would appreciate a piece of help with a simple question: I am reading in R a file that is formatted as a matrix (an example is shown below, although it is more complex, a matrix of 1000 * 1000 ): the names of the columns are 0, 1, 4, 8, etc the names of the rows are 0, 1

Re: [R] Use of contrasts in ANOVA

2015-09-02 Thread David Winsemius
On Sep 2, 2015, at 12:02 PM, Fisher Dennis wrote: > R 3.2.0 > OS X > > Colleagues, > > I am confused about the implementation of contrasts in ANOVA. I have 4 > groups (BATCH) in DATA. My code reads: > contrasts(DATA$BATCH) <- c(-1, -1, 1, 1)/2 > LM

[R] Use of contrasts in ANOVA

2015-09-02 Thread Fisher Dennis
R 3.2.0 OS X Colleagues, I am confused about the implementation of contrasts in ANOVA. I have 4 groups (BATCH) in DATA. My code reads: contrasts(DATA$BATCH) <- c(-1, -1, 1, 1)/2 LM <- lm(VALUES ~ SIDN + BATCH, data=DATA) where bot

Re: [R] Urgent query

2015-09-02 Thread Bert Gunter
Please show us the code that you used that failed. There are several different graphics systems in R, and the answer depends on which system you use. Cheers, Bert Bert Gunter "Data is not information. Information is not knowledge. And knowledge is certainly not wisdom." -- Clifford Stoll On

Re: [R] Urgent query

2015-09-02 Thread David Winsemius
On Sep 2, 2015, at 8:21 AM, Romana Shehla wrote: > Sir/Madam, > > I am a scholar at Aligarh Muslim University and have been > continuously using R language. Recently, I am stuck on labeling axis of the > graphic, I have made. Actually, I want to use mathematical notation > 0 to show the

[R] Urgent query

2015-09-02 Thread Romana Shehla
Sir/Madam, I am a scholar at Aligarh Muslim University and have been continuously using R language. Recently, I am stuck on labeling axis of the graphic, I have made. Actually, I want to use mathematical notation 0https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting g

[R] Visualization of people's interactions by participation to parties

2015-09-02 Thread Voxcoelestis via R-help
Dear all, I have a long list of parties and participants over many years and want to extract network relations between people to identify groups of friends. My list looks like this: Party 1; date party 1; first name 1 last name 1; first name 2 last name 2; first name 3 last name 3; Party 2;

[R] spatial estimation

2015-09-02 Thread fabrizio renzi
I am using spdep package to do spatial estimations in R. Anyway I was not able to find out how to compute the loglikelihood (and a pseudo-R^2) of a 2sls spatial model, estimated through the command stsls. I need some fitting indicator to compare the 2sls model with the one obtained through maxL (c

[R] pcnetmeta help: initial values

2015-09-02 Thread Karla Galaviz
Good morning, I hope this message finds you well. I am writing because I have been trying to run a Bayesian network meta-analysis for 2 weeks now using the pcnetmeta package and have not been able to do it. I have looked for help online and could not find what my problem is. My code is:

Re: [R] Is it possible to run factor analysis on categorical data.

2015-09-02 Thread Bert Gunter
No. Rhetorical question: You appear not to understand what factor analysis does, so why are you trying to use it? In any case, these are statistical questions, and therefore largely off topic here, which is about R programming. I suggest you: 1) Consult a local statistical expert (your advisor?)

[R] Is it possible to run factor analysis on categorical data.

2015-09-02 Thread mylisttech
Dear Rexperts, I tried running factanal on a group and variables ( all categorical datas ) and I learnt that's not possible , at least by using factanal. Can I use FactoMineR for MFA ? Does it do the same thing as factor analysis. Thanks in advance for the help, Harmeet

[R] registerDoParallel and R CMD check --as-cran errors

2015-09-02 Thread Witold E Wolski
I am testing a package with R CMD check and R CMD check --as-cran some code which is run in the examples section uses the foreach and doParallel package. When run with --as-cran I have an error. registerDoParallel function causes an error. Error in .check_ncores(length(names)) : 6 simultaneous