Re: [R] species names on a RDA plot

Hi Antonio, Is it possible to use "add=TRUE" and display the plot in two passes? Jim On Sat, Apr 4, 2015 at 11:44 PM, Antonio Silva wrote: > Hello everybody > > The problem is that species names are shown in the ordination diagram when > the data set has a maximum of 80 rows, and mine has 81 (

Re: [R] Repeated failures to install "caret" package (of Max Kuhn)

On 04.04.2015 19:56, Max Kuhn wrote: I thought that this might be relevant: https://stackoverflow.com/questions/28985759/cant-install-the-caret-package-in-r-in-my-linux-machine but it seems that you installed nloptr. I would also suggest doing the install in base R and trying a different mir

[R] SOLVED: Repeated failures to install "caret" package (of Max Kuhn)

These are notes on what I did to be able to install package "caret". 0.The initial action was to re-install R v. 3.1.3 from this source file: r-base-core_3.1.3-1trusty_amd64.deb (available on CRAN Mirrors). This is the source file for Ubuntu 14.04, known as "trusty", upon which LinuxMint 1

Re: [R] Repeated failures to install "caret" package (of Max Kuhn)

I thought that this might be relevant: https://stackoverflow.com/questions/28985759/cant-install-the-caret-package-in-r-in-my-linux-machine but it seems that you installed nloptr. I would also suggest doing the install in base R and trying a different mirror. I would avoid installing via RStudio

[R] Building Package Help Files

Hello All, I am working on the documentation for my R package and I have a question regarding the help files.  I have noticed in some packages the developer created an alphabetical list with hyper links.  My package is for the analysis of mortgage backed securities.   So I would like to organi

Re: [R] Repeated failures to install "caret" package (of Max Kuhn)

Try installing from somewhere outside of RStudio or reboot and retry in RStudio. I find that if RStudio is open for a long time I occasionally get some weird (buggy?) results but I cannot reproduce to send in an bug report. Load R and from the command line or Windows RGui try installing. As a

Re: [R] command help

Reproducibility https://github.com/hadley/devtools/wiki/Reproducibility http://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example John Kane Kingston ON Canada > -Original Message- > From: ali.alrubaiee1...@gmail.com > Sent: Fri, 3 Apr 2015 14:16:11 -0400 > T

Re: [R] species names on a RDA plot

Hello everybody The problem is that species names are shown in the ordination diagram when the data set has a maximum of 80 rows, and mine has 81 (!!!). So now the question is: it is possible to go through this limitation? Thanks again, Antônio Olinto 2015-04-03 20:08 GMT-03:00 Antonio Silva

Re: [R] glmnet: converting coefficients back to original scale

Thanks for your reply Mehmet. I've found that the problem was that I didn't scale the lambda value. My original example did not follow the instruction not to give a single lambda value, but that in itself wasn't the problem. Example shown below. library(glmnet) library(MASS) set.seed(1) n <- 20

Re: [R] Does fitCopula work for amhCopula and joeCopula?

You might be better off on a list specifically for financial data analysis. In particular, few people here will instantly know that you are talking about functions the copula package. And even many of us who have dabbled in copulas will have difficulty knowing all of the details of them. Also, "