On 09/03/2015 22:39, Hui Du wrote:
Hi All,
I am trying to parse some information from website, say, a linkedin page.
The linkedin url was
url = "http://www.linkedin.com/in/huidu";
I had no problem to use readLines and XML package to collect the
information I need. However, that url became "
ht
I have run into this a couple of times ... If you generate the rectangles once
per row of your data, the fill gets more and more "dense" so your alpha seems
to not work. The annotate call only paints the rectangle once so you don't have
this problem.
-
I guess I should re-frame my question with real data.
> xx
[,1]
[1,] 0.0
[2,] 0.2
[3,] 0.4
[4,] 0.6
[5,] 0.8
> yy
[,1]
[1,] 0.000
[2,] 0.1652000
[3,] 0.4343223
[4,] 0.5996505
[5,] 0.7195857
> cor.mat
[,1] [,2] [,3] [,4][,5]
[1,] 1.00
Hi All,
I am trying to parse some information from website, say, a linkedin page.
The linkedin url was
url = "http://www.linkedin.com/in/huidu";
I had no problem to use readLines and XML package to collect the
information I need. However, that url became "
https://www.linkedin.com/in/huidu"; now
It's hard to tell what you did exactly. Did you do:
mytree <- compute.brlen(mytree)
? That should have worked. I've cc'ed this message to r-sig-phylo, which
is the more appropriate forum.
Cheers,
Simon.
On 10/03/15 07:05, Beth Williams wrote:
Dear All,
I am having some trouble with R and
Hi Hui,
I have used the source_url function in the devtools package with good
results. Give it a shot!
Best,
Jorge.-
On Tue, Mar 10, 2015 at 9:39 AM, Hui Du wrote:
> Hi All,
>
> I am trying to parse some information from website, say, a linkedin page.
> The linkedin url was
>
> url = "http:/
Hi
I'm using svg2swf to collate a number of svg outputs into an swf file. I've
got this working (mainly.) except that I can't control the looping behaviour
of the swf file. In other words, when it's loaded into html it loops
continuously. Is there any way to stop the animation looping, so it
Hi,
I've installed the latest version of R from source on Amazon Linux with the
following config flags:
./configure --with-tcl-config=/opt/ActiveTcl-8.6/lib/tclConfig.sh
--with-tk-config=/opt/ActiveTcl-8.6/lib/tkConfig.sh
After running make and make install, I try to run R and install the
'anesra
Maybe you are looking for rnbinom?
JS Huang
636.536.5635
-Original Message-
From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of Erin Hodgess
Sent: Monday, March 09, 2015 3:52 PM
To: R help
Subject: [R] question about the geometric distribution, please
Hello!
The function rg
Hi Jim,
Thanks for the input but that did not work. I am suing Rstudio by the way
and I guess that has a better device that would support ggplot output.
The annotate options works but that does not explain why the geom_area does
not work:
annotate("rect", xmin=2, xmax=10, ymin=0, ymax=1, fill="b
Dear All,
I am having some trouble with R and would be extremely grateful if anyone has a
way around this. I have loaded a nexus tree from PAUP into R using the command
read.nexus and this loaded, it was reported as "rooted; with no branch
lengths". I then used the command "compute.brlen(mytr
On Mar 9, 2015, at 1:52 PM, Erin Hodgess wrote:
> Hello!
>
> The function rgeom is based on the geometric distribution such that x = 0,
> 1,
>
> Is there a function which produces the geometric results such that x = 1,
> 2, ...
> please?
>
> Thought I'd check before I started coding.
Thi
Hi,
I have a lengthy R script, which just got a bit too long for the console
output to cache all executions history, i.e. when scrolling to the top
the first few commands executed are not listed any more.
What is the current limit (characters? lines?) and how do I increase it?
R is 2.14, Win7
For more than 6 years, Revolution Analytics staff and guests have
written about R every weekday at the Revolutions blog:
http://blog.revolutionanalytics.com
and every month I post a summary of articles from the previous month
of particular interest to readers of r-help.
In case you missed them, h
This works for your example data, but I'd recommend testing it carefully before
using it.
> dat <- data.frame(ID=11:14, VALUE=c(1, 5, 3, 2)*1)
> HURD <- c(50, 75, 100)*1000
> PCT <- c(.02, .04, .08, .1)
> dat$CVALUE <- cumsum(dat$VALUE)
> dat$LVALUE <- dat$CVALUE - dat$VALUE
> dat
ID VALUE
Hello!
The function rgeom is based on the geometric distribution such that x = 0,
1,
Is there a function which produces the geometric results such that x = 1,
2, ...
please?
Thought I'd check before I started coding.
Thank you!
Sincerely,
Erin
--
Erin Hodgess
Associate Professor
Depart
target <- 10
breakpts <- data.frame( PctTarget=c(50,75,100,Inf), Mult=c(2,4,8,10) )
breakpts$LastPct <- c( 0, breakpts$PctTarget[ -nrow( breakpts ) ] )
breakpts$Range <- cut( breakpts$PctTarget, c( 0, breakpts$PctTarget ),
include.lowest=TRUE )
breakpts$DeltaPct <- with( breakpts, diff(
> On Mar 9, 2015, at 1:53 PM, Duncan Murdoch wrote:
>
> On 09/03/2015 1:40 PM, Kristina Loderer wrote:
>> Dear R community,
>>
>> to combine data sets of hierarchical, nested nature (i.e., data sets
>> linked by, for example, the variable "study ID" and then also by
>> "outcome_variable_1" and
On 09/03/2015 1:40 PM, Kristina Loderer wrote:
Dear R community,
to combine data sets of hierarchical, nested nature (i.e., data sets
linked by, for example, the variable "study ID" and then also by
"outcome_variable_1" and "outcome_variable_2") I can use the match files
command in SPSS. What is
yes Ben, this works indeed! Thanks a million!!
On Mon, Mar 9, 2015 at 7:17 PM, Ben Bolker wrote:
> Sophia Kyriakou gmail.com> writes:
>
> >
> > hello, I am using the optim function to maximize the log likelihood of a
> > generalized linear mixed model and I am trying to replicate glmer's
> > es
I have data for 90 climate stations. For each station, I have made 100+
simulations using a statistical model. So, in R, I have 90 dataframes, each
dataframe has 100+ simulations arranged column-wise.
Now, I would like to fit an extreme value distribution (EVD) to each climate
station. That is
Dear R community,
to combine data sets of hierarchical, nested nature (i.e., data sets
linked by, for example, the variable "study ID" and then also by
"outcome_variable_1" and "outcome_variable_2") I can use the match files
command in SPSS. What is the equivalent command / function in R? Is it
th
Hi R list,
I am using the GPfit package to fit Gaussian Process model.
The kernel in the package is,
K(x, x') = sigma^2 * exp(x-x')^2
My kernel have an extra term,
K((x, z), (x', z')) = sigma^2 * exp(x-x')^2 * exp(z-z')^2
The function corr_matrix() is,
corr_matrix(X, beta, corr=list(type="expon
This is the wrong list: see the posting guide. As it is about compiled
code, R-help is quite inappropriate, and as it is Mac-specific, post to
R-sig-mac.
The issue appears to be that you did not follow the R-admin manual and
used the wrong Fortran compiler: gfortran-4.2.3 is documented for
M
R 3.1.3 is available for installation via source-code.
However ./configure terminates with
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... unknown
configure: WARNING: unknown Fortran name-mangling scheme
checking whether gfor
Tom and Bill--
Thanks! Both excellent solutions.
--Chris
Christopher W. Ryan, MD, MS
cryanatbinghamtondotedu
Early success is a terrible teacher. You’re essentially being rewarded
for a lack of preparation, so when you find yourself in a situation
where you must prepare, you can’t do it. You do
Sophia Kyriakou gmail.com> writes:
>
> hello, I am using the optim function to maximize the log likelihood of a
> generalized linear mixed model and I am trying to replicate glmer's
> estimated components. If I set both the sample and subject size to q=m=100
> I replicate glmer's results for the
We are please to announce the following book:
Title: Beginner's Guide to Data Exploration and Visualisation with R.
Authors: Ieno & Zuur
Book website: http://www.highstat.com/BGDEV.htm
Paperback or EBook can be order (exclusively) from:
http://www.highstat.com/bookorder.htm
TOC: http://www.h
It is very hard to figure out what you are trying to do.
1. All of the VALUEs are greater than the target of 100
2. Your description of what you want does not match your example.
Perhaps VALUE should be divided by 1000 (e.g. not 1, but 10)?
Perhaps your targets do not apply to VALUE, but to
PIKAL Petr writes:
> Hi
>
> Not extremely clear what do you want to plot. Do you want to add a
> line which marks total number of files each day regardless of user? Or
> a total number of files regardless of date coloured by user?
Sorry, I was unclear. I meant that I would like to plot the foll
Hi David,
thanks for the reply. My spelling of the numbers was not correct. What I mean
with 100.000 is 10.00 !
I have corrected the values in my example below me.
Maybe you can understand it better now.
Crucially is, that the "MARGE" rises up in dependence of the ID. The ID 11 will
be cou
hello, I am using the optim function to maximize the log likelihood of a
generalized linear mixed model and I am trying to replicate glmer's
estimated components. If I set both the sample and subject size to q=m=100
I replicate glmer's results for the random intercept model with parameters
beta=-1
You need to solve step 1 (converting to Date class) before you can solve
step 2 (getting the year as a number).
In the data you are starting with, the first value in the Date column is
41163. You don't say whether that column is numeric or character, so let's
try it both ways:
> as.Date('41163','
Hi
Not extremely clear what do you want to plot. Do you want to add a line which
marks total number of files each day regardless of user? Or a total number of
files regardless of date coloured by user?
In each case you shall search functions geom_hline or geom_abline
http://stackoverflow.com/q
Hi,
Here are my data:
> d
user files date
1 alice18 2013-09-15
2 bob 5 2013-09-15
3 carol21 2013-09-15
4 alice22 2013-09-08
5 bob 9 2013-09-08
6 carol14 2013-09-08
7 alice26 2013-09-01
8 bob 3 2013-09-01
9 carol22 2013-09-01
I would like to plot
Hello together,
i have a litte problem. Maybe anyone can help me.
I have to calculate a new column in dependence of a target value.
As a example: My target value is 100.000
At the moment I have a data.frame with the following values.
IDVALUE
1 111
2 125
3 1330
Use reverseComplement() in the Biostrings package.
B.
On Mar 8, 2015, at 10:08 PM, saran wai wrote:
> Hi I'm new to R programming and trying to write program for Reverse and
> Complementary Base. the objective is to Design A DNA primer. So I have a DNA
> sequence with base A T C G and A compl
Please read the Posting Guide. Unreleased versions of R are off-topic in this
mailing list (see the R-devel mailing list). RStudio-specific questions are
also off-topic here (should be about R, not IDEs).
---
Jeff Newmiller
Hi I'm new to R programming and trying to write program for Reverse and
Complementary Base. the objective is to Design A DNA primer. So I have a DNA
sequence with base A T C G and A complement to T; T=A;C=G;G=C. I just figure
out How to Reverse It Already. but for the Complement i can only make
Hi,
Look to the following code:
set.seed(1)
dados =
data.frame(valor=rnorm(100),var=sample(LETTERS[c(1,2,3,5)],100,replace=T),peso=rpois(100,2))
dados[1:10,]
dados$var <- factor(dados$var,levels=LETTERS[1:5])
table(dados$var)
A B C D E
31 31 19 0 19
When I try to use summarize, Hmisc packa
The package maintainer may be able to give help. However, I don't get the same
output as you (3.1.2). Perhaps you can update and solve your problem.
> require(survMisc)
Loading required package: survMisc
Loading required package: survival
Loading required package: splines
Loading required packa
Thanks Pascal. Not yet resolved.
Here is an example of symbolic link between libR.so
https://support.rstudio.com/hc/communities/public/questions/200661703-R-shared-library-usr-local-lib-R-lib-libR-so-not-found-UBUNTU-11-
When I get a symbolic link with:
sudo ln -s /usr/lib/R/lib/libR.so /usr/lo
Hello,
There is a dedicated support to RStudio here: https://support.rstudio.com
Regards,
Pascal
On Mon, Mar 9, 2015 at 7:41 PM, Karim Mezhoud wrote:
> Dear All,
> I am actually on R-devel using shell consol. When I run RStudio, it can't
> find libR.so in the new /lib folder where is libRblas.s
Dear All,
I am actually on R-devel using shell consol. When I run RStudio, it can't
find libR.so in the new /lib folder where is libRblas.so libRlapack.so.
At first step I configure R-devel to share library with ./configure
--enable-R-shlib.
when I copied libR.so from /usr/lib/R/lib/libR.so (sta
Hi
As you do not accept solution with adding so many NA rows for those you do not
have repetitions I think that merge together with some preparation is the way
to go.
First of all do not use cbind when constructing data frame
comAn=data.frame(animals,animalYears,animalMass)
# indicator variab
The build system rolled up R-3.1.3.tar.gz (codename "Smooth Sidewalk") this
morning.
The list below details the changes in this release.
You can get the source code from
http://cran.r-project.org/src/base/R-3/R-3.1.3.tar.gz
or wait for it to be mirrored at a CRAN site nearer to you.
Binaries
46 matches
Mail list logo
