Re: [R] Substring replacement in string

Dear Hervé, Many thanks for your suggestion. Gabor Grothendieck proposed a simple one-liner that works perfectly for my purposes: gsub("(\\b[a-oq-z][a-z0-9]*)", "1-\\U\\1", x, perl = TRUE) where x is the respective string. Best wishes, Alrik -Ursprüngliche Nachricht- Von: Hervé Pagès [

Re: [R] r script in web

I cannot see how that would be possible. R must be installed in order to use it. --- Jeff NewmillerThe . . Go Live... DCN:Basics: ##.#. ##.#. Live Go...

Re: [R] Firefox not showing R help.

See inline below. On 01/03/15 10:59, Duncan Murdoch wrote: On 28/02/2015 4:10 PM, Rolf Turner wrote: Firefox recently updated itself on my laptop. Now when I ask for R help --- e.g. ?plot --- I just get my home page. And no help. If I do "?plot" again after Firefox has opened its window, I j

Re: [R] Lubridate and NameSpace

Not certain but perhaps: > lubridate::%m+% there is a subtle difference between what the two and three colons do. -Roy On Feb 28, 2015, at 9:25 AM, Glenn Schultz wrote: > Hello All, > > I am working on a package very near completion - roxygenizing it now. The > namespace imports from lubr

[R] r script in web

hi i want to run r script in web without install r on server(my server is windows). is it possible?how? thank you [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mai

[R] Lubridate and NameSpace

Hello All, I am working on a package very near completion - roxygenizing it now.  The namespace imports from lubridate importFrom(lubridate,"%m+%").  The problem is: Lubridate will not load with bondlab, I have to manually click on lubridate in R Studio to load it I tried calling function usin

[R] scatter plot matrix with multiple trend lines and p values

I am trying to create a scatter plot matrix in which the lower panels contain scatter plots colored by group with trend lines by group, and the upper panels contain r and p values. Using pairs() I was able to get close (ie, scatter plot matrix on bottom with one trend line and correlation coefficie

Re: [R] Substring replacement in string

Hi Alrik, With the Biostrings/IRanges infrastructure (Bioconductor packages), you can do this with: library(Biostrings) x0 <- BString("pmin(pmax(pmin(x1, X2), pmin(X3, X4)) == Y, pmax(Z1, z1))") donttouch_words <- c("pmin", "pmax") ## Extract the substrings to modify (target substring

Re: [R] Firefox not showing R help.

On 28/02/2015 4:10 PM, Rolf Turner wrote: > > Firefox recently updated itself on my laptop. Now when I ask for R help > --- e.g. ?plot --- I just get my home page. And no help. If I do "?plot" > again after Firefox has opened its window, I just get yet another > Firefox window, opened to my ho

[R] Firefox not showing R help.

Firefox recently updated itself on my laptop. Now when I ask for R help --- e.g. ?plot --- I just get my home page. And no help. If I do "?plot" again after Firefox has opened its window, I just get yet another Firefox window, opened to my home page. (I have my preferences set to "When

Re: [R] Substring replacement in string

Dear Gabor, That works perfectly! Many thanks and best wishes, Alrik -Ursprüngliche Nachricht- Von: Gabor Grothendieck [mailto:ggrothendi...@gmail.com] Gesendet: Samstag, 28. Februar 2015 19:30 An: Alrik Thiem Cc: r-help@r-project.org Betreff: Re: [R] Substring replacement in string R

Re: [R] Substring replacement in string

Replace the + (i.e. 1 or more) in the pattern with a * (i.e. 0 or more): x <- "pmin(pmax(pmin(a,B),pmin(a,C,d))==Y,pmax(E,e))" gsub("(\\b[a-oq-z][a-z0-9]*)", "1-\\U\\1", x, perl = TRUE) giving: [1] "pmin(pmax(pmin(1-A,B),pmin(1-A,C,1-D))==Y,pmax(E,1-E))" Here is a visualization of the

Re: [R] evaluate logical expressions

Hi, I assume input y to wrapper <- function(y) {function(x) {(y)}} is a function. In the statement to assign gfunc[[i]]<- gsub("(Gene)([[:digit:]])", "x[\\2]", func[[i]]) the mode of gsub("(Gene)([[:digit:]])", "x[\\2]", func[[i]]) is character. Is this the issue? -- View this message in co

Re: [R] Substring replacement in string

Ah, I see what you mean. Thanks for suggesting. I'll try. -Ursprüngliche Nachricht- Von: Michael Dewey [mailto:i...@aghmed.fsnet.co.uk] Gesendet: Samstag, 28. Februar 2015 17:31 An: Alrik Thiem Cc: r-help@r-project.org Betreff: Re: AW: [R] Substring replacement in string Your original pr

Re: [R] Substring replacement in string

Your original problem statement seemed to me to be one of wanting to transform all the lower case identifiers to upper except for pmin and pmax. My suggestion was not to bother and transform everything and then define PMIN and PMAX. On 28/02/2015 14:34, Alrik Thiem wrote: Dear Michael I'm no

Re: [R] title of r plots

Use help("plotmath") to see all the details - you can use tildes for spaces, asterisks for no spaces. Bill Dunlap TIBCO Software wdunlap tibco.com On Fri, Feb 27, 2015 at 8:52 PM, li li wrote: > > Thanks very much. > Also How do add an empty space when using expression()? > When I do the follow

Re: [R] Substring replacement in string

string <- "pmin(1, x)" expr <- parse(text=string)[[1]] will convert the string to an unevaluated language object. Bill Dunlap TIBCO Software wdunlap tibco.com On Fri, Feb 27, 2015 at 11:25 PM, Alrik Thiem wrote: > Many thanks. Unfortunately, I cannot work directly on these expressions > si

Re: [R] Substring replacement in string

Dear Michael I'm not sure how you mean this. Maybe a more general description of my problem is helpful for clarifying. What I have to deal with are truth table output functions that always take, for example, the following form: Delta <- "(a*B+a*C*d<=>Y)*(E+e)" I.e. these functions will always

Re: [R] Substring replacement in string

Dear Alrik This may seem a silly suggestion but why not just define new functions PMIN and PMAX to call pmin and pmax. Obviously that does not solve your problem if it is more general than your example. On 28/02/2015 13:16, Alrik Thiem wrote: Dear Gabor, Many thanks. Works like a charm, but

[R] Using a text file as a removeWord dictionary in tm_map

Hi list Although this query applies specifically to the tm package, perhaps it's something that others might be able to lend a thought to. Using tm to do some initial text mining, I want to include an external (to R) generated dictionary of words that I want removed from the corpus. I have

Re: [R] Substring replacement in string

Dear Gabor, Many thanks. Works like a charm, but I can't get it to work with "pmin(pmax(pmin(a,B),pmin(a,C,d))==Y,pmax(E,e))" i.e., with strings where there're no integers following the components in the pmin/pmax functions. Could this be generalized to handle both cases? Best wishes, Alrik -

[R] Package survMisc

Hi R users. I have some problems with the package “survMisc”. When I am loading it I am getting the following > library(survMisc) Loading required package: survival Loading required package: splines Loading required package: km.ci Loading required package: ggplot2 Loading required package:

Re: [R] Substring replacement in string

On Fri, Feb 27, 2015 at 5:19 PM, Alrik Thiem wrote: > I would like to replace all lower-case letters in a string that are not part > of certain fixed expressions. For example, I have the string: > > "pmin(pmax(pmin(x1, X2), pmin(X3, X4)) == Y, pmax(Z1, z1))" > > Where I would like to replace all l