Re: [R] Trouble with LSD.test / agricolae package

2015-01-06 Thread Jeff Newmiller
The R for Windows FAQ item 2.2 States that installing to a network share is not supported. I don't know how you ended up trying to use \\ccofs1\Shared\Users\Dustin Batt for your home directory, but that appears to be a problem for R. Somehow you need a path beginning with a drive letter... talk

[R] add bootstrap to neighbour joining tree using nj function (ape package)

2015-01-06 Thread Luigi Marongiu
Dear all, I am trying to create a neighbour joining tree using the nj() function of ape. I would like to add also the bootstrap. I created a distance matrix with the Kimura 80 algorithm using the muscle function. If I use nj on the distance matrix without any other argument I do obtain the tre

Re: [R] ggplot with sparse layout

2015-01-06 Thread ONKELINX, Thierry
Dear Tom, Does ggplot(data,aes(x=x,y=y))+geom_point(aes(color=group))+facet_wrap(~group + id) gives what you need? Note that facet_grid by design aligns the subplots into rows and columns with the same level. Best regards, ir. Thierry Onkelinx Instituut voor natuur- en bosonderzoek / Research

Re: [R] How to group by then count?

2015-01-06 Thread Marc Schwartz
> On Jan 6, 2015, at 3:29 PM, Monnand wrote: > > Thank you, all! Your replies are very useful, especially Don's explanation! > > One complaint I have is: the function name (talbe) is really not very > informative. Why not? You used the word 'table' in your original post, except as Don noted,

Re: [R] Manipulating Plots

2015-01-06 Thread Rolf Turner
I don't think this has any relevance. The deldir package doesn't use lattice graphics. I think that Jean Adams has answered the OP's question adequately. cheers, Rolf On 07/01/15 07:05, Richard M. Heiberger wrote: Is this what you are looking for. This is in lattice graphics. library(

Re: [R] How to group by then count?

2015-01-06 Thread Monnand
Thank you, all! Your replies are very useful, especially Don's explanation! One complaint I have is: the function name (talbe) is really not very informative. On Sun Jan 04 2015 at 5:03:47 PM MacQueen, Don wrote: > This seems to me to be a case where thinking in terms of computer > programming

[R] ggplot with sparse layout

2015-01-06 Thread Tom Wright
Hi, I would like to plot the following data such that each plot represents the data from a single id and the plots are grouped according to the group variable. data<-data.frame(id=factor(rep(1:6,each=3)), group=factor(c('a','a','b','c','c','c')), x=runif(18,0,10), y=rnorm(18,0,1)) The followi

[R] Trouble with LSD.test / agricolae package

2015-01-06 Thread dbatt
Hi, I'm a relatively new user to R and I am having trouble properly downloading the agricolae package in order to use the LSD.test function. Below is the code: package ‘sp’ successfully unpacked and MD5 sums checked Warning in install.packages : unable to move temporary installation ‘\\ccofs1\

Re: [R] help

2015-01-06 Thread Sarah Goslee
On Tue, Jan 6, 2015 at 2:55 AM, victor okonga wrote: > any one ever used this book "Understanding and Applying Research Design?" > or has an e-copy? Assuming that's the Abbott and McKinney book, this isn't even remotely an R question since they use SPSS. According to the description, anyway, sinc

Re: [R] problem in R

2015-01-06 Thread Uwe Ligges
On 05.01.2015 18:03, thanoon younis wrote: Dear all R members I have a problem in the R when i wanted to call winbugs as following #Input data set for WinBUGS thd18 <-read.table("C:/Users/hp/Desktop/thd18.txt") #Input data set for WinBUGS data<-list(N1=2000,N2=2000,P=9,R=Ro,z1=

[R] help

2015-01-06 Thread victor okonga
any one ever used this book "Understanding and Applying Research Design?" or has an e-copy? [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PL

Re: [R] Manipulating Plots

2015-01-06 Thread Richard M. Heiberger
Is this what you are looking for. This is in lattice graphics. library(lattice) x <- seq(0, 4*pi, length=101) y <- sin(x) G <- xyplot(y ~ x, type="l") G H <- update(G, xlim=c(4,6), ylim=c(-1, -.4)) H On Tue, Jan 6, 2015 at 12:23 PM, Raphael Päbst wrote: > Hello, > I have a somewhat complicated

Re: [R] Manipulating Plots

2015-01-06 Thread Adams, Jean
Raphael, I'm assuming that the tile.list() function you're using is from the deldir package. I'm not sure what the figure() function does. Using an example tessellation from the help file for the tile.list() function, I created two plots: one with the full view and one with the zoomed in view.

Re: [R] Manipulating Plots

2015-01-06 Thread Raphael Päbst
The relevant bit of code should be this one: #Getting a list of Voronoi-Cells: VoronoiCells <- tile.list(DelTriCor) # plotting all of them: figure() plot(VoronoiCells,fillcol=CellColor,close=TRUE,xlim=xlim,ylim=ylim) I hope this helps. All the best! Raphael On 1/6/15, Adams, Jean wrote: > It

Re: [R] Manipulating Plots

2015-01-06 Thread Adams, Jean
It will be easier for folks to help you if you provide example code that produces a plot like the one you are dealing with. Jean On Tue, Jan 6, 2015 at 11:23 AM, Raphael Päbst wrote: > Hello, > I have a somewhat complicated question and hope, someone can help me > or that there is a solution at

[R] Streaming data connection in R

2015-01-06 Thread Arjun Satya
Hello, Is there a way to establish connection between Kafka and R? I know it exists for Hadoop and R. In big db architecture, I have Cassandra(storage), Spark(aggregation) and Kafka(read/write). Thanks, Arjun Satya We raise our voice, so that our echo may shape a better tomorrow. TIMES NOW

[R] Fitting distributions in uneven parameters

2015-01-06 Thread Maria Lathouri
Hi All, First of all, I would like to wish you all a Happy New Year, full of creativity, inspiration and prosperity. Now, I have a data set with two uneven size parameters  which is the following:     x1    x2 1  0.98    0.952  0.99    0.98 3  1.11    1.01 4

[R] Manipulating Plots

2015-01-06 Thread Raphael Päbst
Hello, I have a somewhat complicated question and hope, someone can help me or that there is a solution at all for my problem. I am using R to plot the results of a Voronoi-Tesselation. I am however only interested in a small part of the plot, around the center. Is there a way to cut out the centra

Re: [R] "se.fit" option to the predict.nls() function

2015-01-06 Thread Ben Bolker
All I had in mind was that *if* you can set up an optimization over the parameters such that the prediction for a particular set of predictors is constrained to come out to a specified target value (i.e., nonlinear equality constraints), then you can compute profile confidence intervals on the pred

Re: [R] "se.fit" option to the predict.nls() function

2015-01-06 Thread peter dalgaard
On 06 Jan 2015, at 07:40 , Rune Haubo wrote: > On 5 January 2015 at 21:08, Ben Bolker wrote: >> Roger Coppock cox.net> writes: >> >>> >>> When will "R" implement the "se.fit" option to the >>> predict.nls() function? Is there some schedule? >>> >> >> I think this is unlikely to happen, e