If you run R CMD check on your package successfully, then that file will be
generated as needed automatically. If you install your package for you're own
use before sending it to CRAN then you can see the file by following the link
on the help index html page for your package.
--
You are not talking about a vignette. That is the pdf version of the help
files, automatically generated from the same Rd files as the HTML versions.
If you are not going to write the Rd file directly, you probably want roxygen.
Markdown is weak on links and template structures, and Rd files use
On Dec 5, 2014, at 4:15 PM, Ranjan Maitra wrote:
> Btw, I did hear back immediately from Ian Fellows and it is being maintained
> as his time permits, though he himself is not a windows user, and possibly
> therefore the issues. I thanked him for his e-mail and was relieved to note
> that this
Dear expeRts,
I know we can build a vignette from .Rmd file, but i find a lot of r
packages have R topic documented words then followed an index, then
functions'document which are already described in .RD files. I mean that , i
don't want to write a vignette , but rather using function docum
Btw, I did hear back immediately from Ian Fellows and it is being maintained as
his time permits, though he himself is not a windows user, and possibly
therefore the issues. I thanked him for his e-mail and was relieved to note
that this is not going away yet.
Thanks again to Duncan, Sarah and
Thank you very much for the tips, Martin and Duncan! Rprof and operf are
helping me a lot!!
Also, I am now in R-dev maillist and I see there seems to be more
appropriate to this kind of question.
Best,
Charles
On Wed, Dec 3, 2014 at 12:03 AM, Duncan Murdoch
wrote:
> On 02/12/2014, 4:43 PM, Ch
On Dec 5, 2014, at 12:11 PM, Ranjan Maitra wrote:
> On Fri, 5 Dec 2014 12:54:17 -0500 Duncan Murdoch
> wrote:
>
>> On 05/12/2014 12:34 PM, Ranjan Maitra wrote:
>>> Hi,
>>>
>>> I have been using Deducer for the past year for my very basic 100-level
>>> introductory statistics classes for stud
On Fri, 5 Dec 2014 15:27:10 -0500 Duncan Murdoch
wrote:
> On 05/12/2014 3:11 PM, Ranjan Maitra wrote:
> > On Fri, 5 Dec 2014 12:54:17 -0500 Duncan Murdoch
> > wrote:
> >
> > > On 05/12/2014 12:34 PM, Ranjan Maitra wrote:
> > > > Hi,
> > > >
> > > > I have been using Deducer for the past year
On 05/12/2014 3:11 PM, Ranjan Maitra wrote:
On Fri, 5 Dec 2014 12:54:17 -0500 Duncan Murdoch
wrote:
> On 05/12/2014 12:34 PM, Ranjan Maitra wrote:
> > Hi,
> >
> > I have been using Deducer for the past year for my very basic 100-level
introductory statistics classes for students from other di
To find the maintainer, see
?maintainer
The maintainer is also listed on the CRAN page.
http://cran.r-project.org/web/packages/Deducer/index.html
Sarah
On Fri, Dec 5, 2014 at 3:11 PM, Ranjan Maitra
wrote:
> On Fri, 5 Dec 2014 12:54:17 -0500 Duncan Murdoch
> wrote:
>
>> On 05/12/2014 12:34 PM
On Fri, 5 Dec 2014 12:54:17 -0500 Duncan Murdoch
wrote:
> On 05/12/2014 12:34 PM, Ranjan Maitra wrote:
> > Hi,
> >
> > I have been using Deducer for the past year for my very basic 100-level
> > introductory statistics classes for students from other disciplines. I
> > really have liked using
Does the following do what you want?
> raw <- c("A/B", " /B", "A/", "/ ")
> tmp <- sub("^ */", "./", raw)
> cleaned <- sub("/ *$", "/.", tmp)
> cleaned
[1] "A/B" "./B" "A/." "./."
(The " *" is to allow optional spaces before or after the slash.)
Bill Dunlap
TIBCO Software
wdunlap tibco.com
On F
On 12/5/2014 11:24 AM, Kate Ignatius wrote:
I have genetic information for several thousand individuals:
A/T
T/G
C/G etc
For some individuals there are some genotypes that are like this: A/,
C/, T/, G/ or even just / which represents missing and I want to
change these to the following:
A/ A/
Hi,
Briefly, you need to read about regular expressions. It's possible to
be incredibly specific, and even to do what you want with a single
line of code.
It's hard to be certain of exactly what you need, though, without a
reproducible example. See inline for one possibility.
On Fri, Dec 5, 2014
I have genetic information for several thousand individuals:
A/T
T/G
C/G etc
For some individuals there are some genotypes that are like this: A/,
C/, T/, G/ or even just / which represents missing and I want to
change these to the following:
A/ A/.
C/ C/.
G/ G/.
T/ T/.
/ ./.
/A ./A
/C ./C
/G
The simplest approach, and a good one for someone new to R, would be
something like this:
myfiles <- c('fileA', 'fileB','fileC")
for (nm in myfiles) {
cat('now reading input file',nm,'\n')
mydat <- read.table( paste0(nm,'.txt'), header=TRUE)
pdf( paste0(nm, '.pdf') )
plot(etc , main=nm)
Your question is not clear to me.
> x$alpha[1:2]
[1] "a" "b"
> x$alpha[2]
[1] "b"
>
Is this what you are looking for? I hope this helps.
Chel Hee Lee
On 12/5/2014 11:12 AM, Dinesh Chowdhary wrote:
x <- list(seq = 3:7, alpha = c("a", "b", "c"))
x$alpha
[1] "a" "b" "c"
x["alpha"]
$alpha
[1
'NaN' is a reserved keyword that implies 'Not a number'. I see that you
use a character vector that includes 'NA' and 'NaN'. The former 'NA' is
considered as a missing value; however, the latter 'NaN' is considered
as a string 'NaN'. That's why three levels of 'NaN', 'no', 'yes' are
shown.
On Dec 5, 2014, at 7:16 AM, Dinesh Chowdhary wrote:
> R-3.1.2
>
>> x <- factor(c("yes", "yes", "no", NA, "yes", "no", NaN))
>> x
> [1] yes yes noyes no NaN
> Levels: NaN no yes
>> is.nan(x)
> [1] FALSE FALSE FALSE FALSE FALSE FALSE FALSE
>
>> From the above snippet can you notice that
Hello,
I am trying a factor analysis via R.
When running the pricipal axis analysis I do get different tables depending
on the print command.
This is my factor analysis:
fa.pa_cor_3_2<- fa(ItemsCor_4, nfactors=3, fm="pa",rotate="oblimin")
To get the h2 I did the following print command:
print (fa
> x <- list(seq = 3:7, alpha = c("a", "b", "c"))
> x$alpha
[1] "a" "b" "c"
> x["alpha"]
$alpha
[1] "a" "b" "c"
> x[c(1,2)]
$seq
[1] 3 4 5 6 7
$alpha
[1] "a" "b" "c"
*> x[c(1, alpha[2])]*
*$*
*NULL*
*$*
*NULL*
How to access a character subset withing a list?
Thank you for your effort...
plot.new()
abline(0,1)
abline(1,1)
# or as Michael suggest
plot(1:10, 1:10, type = "n")
# then
abline(0,1)
abline(1,1)
Best
Matteo Murenu,
Cagliari, IT
-Original Message-
From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of David
Winsemius
Sent: 05 December 2014 10:07
To: Ad
R-3.1.2
> x <- factor(c("yes", "yes", "no", NA, "yes", "no", NaN))
> x
[1] yes yes noyes no NaN
Levels: NaN no yes
> is.nan(x)
[1] FALSE FALSE FALSE FALSE FALSE FALSE FALSE
>From the above snippet can you notice that the "NaN" value is not logically
identified in a vector? Can anyone ela
On 05/12/2014 12:34 PM, Ranjan Maitra wrote:
Hi,
I have been using Deducer for the past year for my very basic 100-level
introductory statistics classes for students from other disciplines. I really
have liked using it for this specific purpose (takes me out of JMP!). However,
over the past f
Hi,
I have been using Deducer for the past year for my very basic 100-level
introductory statistics classes for students from other disciplines. I really
have liked using it for this specific purpose (takes me out of JMP!). However,
over the past few months, issues have started cropping up with
Your question is not clear to me. Do you wish to start numbers from 200
using 'formatC()'?
> formatC(seq(from=200, to=1200, by=500), width=5, flag="0")
[1] "00200" "00700" "01200"
You can do the same job using function 'sprintf()' as shown in the below:
> sprintf("%05d", seq(from=200, to=1200
You could read the help file:
?formatC
which says that flag modifies how the numbers are formatted... it does not
affect what numbers are used.. that is given by the "x" argument (typically
the first item in the argument list to formatC). In your case I think that came
from a call to the seq
Hi Chel,
I got it right.
Many thanks.
file.rename(file_names, to=paste0("rcp45_Daily_Sim", 200:210))
list.files(pattern="rcp45_Daily_Sim")
[1] "rcp45_Daily_Sim200" "rcp45_Daily_Sim201" "rcp45_Daily_Sim202"
On Friday, December 5, 2014 9:35 AM, Zilefac Elvis
wrote:
Hi Chel,
How can I modify th
I'm trying to debug a curious network issue, I wonder if anyone can help
me as I (and my local sysadmin) am stumped:
This base R command takes ~1 minute to complete:
readLines(url("http://bioconductor.org/biocLite.R";))
(biocLite.R is a couple of KB in size)
Using RCurl (and so libcurl under
Hi Chel,
How can I modify the script such that the numbering starts from 200,... instead
of 001?
flag="0" does not accept anything other than 0.
Thanks,
Asong.
On Thursday, December 4, 2014 11:17 PM, Chel Hee Lee
wrote:
I see that a function 'format()' is used in your code.
> format(c(1,5,32
Don't have your package "mess with" (e.g. assign) to the global
environment. Also, CRAN won't accept such packages.
A good rule of thumb is that if you find yourself using assign(), get(),
and <<-, or assigning explicitly to the global environment, it's a good
indicator that you're hiking up the w
Of course, you probably also need to wrap your code into a function first. R
script files are not very good units of code to repeat multiple times. Once you
have a function that you can give a data file name to and get a plot, then it
is easy to use the lapply function to call that function once
Dear Thierry,
Thanks for your suggestion...but I don't how I would apply this for my
situation, the R help isn't much help for me either. (Apologies - I am
a rookie!) Do I still need a for loop?
Many thanks
Thomas
On Fri, Dec 5, 2014 at 2:20 PM, ONKELINX, Thierry
wrote:
> Dear Thomas,
>
> lis
Hi,
An other alternative using "assign" function
func <- function(){
X <- 5
assign("X", X, envir = .GlobalEnv)
}
Ô__
c/ /'_;kmezhoud
(*) \(*) ⴽⴰⵔⵉⵎ ⵎⴻⵣⵀⵓⴷ
http://bioinformatics.tn/
On Tue, Dec 2, 2014 at 8:40 PM, Adams, Jean wrote:
> Glad to see this query and the responses. You
Dear Thomas,
list.files() will be your new best friend.
Best regards,
ir. Thierry Onkelinx
Instituut voor natuur- en bosonderzoek / Research Institute for Nature and
Forest
team Biometrie & Kwaliteitszorg / team Biometrics & Quality Assurance
Kliniekstraat 25
1070 Anderlecht
Belgium
+ 32 2 525
Great!
Thank you!
On Fri, Dec 5, 2014 at 12:48 AM, Wush Wu wrote:
> Dear Erin,
>
> For the issue of printing big data.frame, you could define a customized
> `print.data.frame` in the user environment
>
> to prevent R prints all the data. For example:
>
> ```r
> print.data.frame <- function(df)
Hi,
I have written a script that currently reads in a .txt file where I
specify the name e.g
mydata<-read.table("a_date.txt", header=TRUE)
The script eventually produces a plot, e.g:
pdf(file="myfilename.txt")
plot(etc)
dev.off
What I want to do is run this script on several input files in my
The following example may give you an idea regarding your question.
Please see what happens by typing the codes
> x <- seq(from=-5, to=5, by=1)
> y1 <- 0 + 0.5*x
> y2 <- 0 - 0.5*x
>
> plot(x,y1, type="n")
> points(x,y1)
> points(x,y2)
> abline(a=0, b=0.5)
> abline(a=0, b=-0.5)
Is this what you
If I understand correctly
plot(1:10, 1:10, type = "n")
should get you started.
This is an Anglophone list by the way.
On 04/12/2014 22:23, Adrien Bonvin wrote:
Bonjour
J’aimerais savoir comment créer un “plot vide”, dans lequel je pourrais ajouter
deux valeurs d’abline, tracées à partir de de
On Dec 5, 2014, at 12:30 AM, Adrien Bonvin wrote:
> Bonjour
> Hi everybody,
>
> Firs of all, sorry for my terrible English,
>
> I would like to know if it’s possible to create an “empty plot” in which i
> could add two ablines I created on two different plots earlyer in my script.
>
>
>
Rea
Le 4 d�c. 2014 � 13:40, Tal Galili a �crit :
> By accident I came across the following example:
>
> x <- 1:3
> y <- 1:3
> line(x, y) # returns:
>
> Call:
> line(x, x)
>
> Coefficients:
> [1] -2 2
>
>
> While when using 1:4, it will give the more reasonable 0,1 coefficients.
>
> I imagine
Bonjour
Hi everybody,
Firs of all, sorry for my terrible English,
I would like to know if it’s possible to create an “empty plot” in which i
could add two ablines I created on two different plots earlyer in my script.
As a result I would like to have a plot with only the two ablines (in t
On Dec 4, 2014, at 6:55 PM, dila radi wrote:
> Dear R users,
>
> I am looking to fit a gamma curve onto a histogram of the data.
>
> Consider dt1 as my data:
> c(203.9, 91.5, 24.5, 34.5, 164, 144, 160.5, 195, 191.5, 189,
> 133, 110.5, 155, 80.5, 250.5, 116, 145, 118.5, 406, 183.5, 142.5,
> 197,
On Dec 4, 2014, at 11:24 PM, Dirkse van Schalkwyk, Theuns
wrote:
> In the code below, the last line of code does what I am trying to do;
> however, I do not know the name of the variable before the user creates it,
> by choosing values in Route1. So, how can I assign values to the variables
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