Re: [R] list.files() not compatible with all Unicode characters; file.exists() is compatible.

2014-11-24 Thread Prof Brian Ripley
On 25/11/2014 01:25, MacQueen, Don wrote: Sorry, your email was undecipherable because you sent HTML formatted email. Please send plain text Also, the 'at a minimum' information requested by the posting guide is essential here (which OS and locale, in particular). In general file names not

Re: [R] list.files() not compatible with all Unicode characters; file.exists() is compatible.

2014-11-24 Thread MacQueen, Don
Sorry, your email was undecipherable because you sent HTML formatted email. Please send plain text -- Don MacQueen Lawrence Livermore National Laboratory 7000 East Ave., L-627 Livermore, CA 94550 925-423-1062 On 11/24/14, 11:07 AM, "Nissim Kaufmann" wrote: >Hello,I have some files with st

Re: [R] DOT PLOT help!!

2014-11-24 Thread MacQueen, Don
Turns out that stripchart() is the easiest way to get what I believe the OP is looking for. Here is some example data tmp <- data.frame( g=sample(c('M','F'), 25, replace=TRUE), val = runif(25, 1, 10)) Then: stripchart(val ~ g, data=tmp, vertical=TRUE) or with some improve

Re: [R] More elegant way of stacking the data

2014-11-24 Thread David Winsemius
On Nov 24, 2014, at 3:12 PM, Dimitri Liakhovitski wrote: > I have the data frame 'df' and my desired solution 'out'. > I am sure there is a more elegant R-way to do it - without a loop. > > df = data.frame(a=1:5,b=letters[1:5],c1=1:5,c2=2:6,c3=3:7,c4=4:8) > mylist=NULL > for(i in 1:4){ > myname

[R] More elegant way of stacking the data

2014-11-24 Thread Dimitri Liakhovitski
I have the data frame 'df' and my desired solution 'out'. I am sure there is a more elegant R-way to do it - without a loop. df = data.frame(a=1:5,b=letters[1:5],c1=1:5,c2=2:6,c3=3:7,c4=4:8) mylist=NULL for(i in 1:4){ myname<-paste("c",i,sep="") mylist[[i]]<-df[c("a","b",myname)] names(mylis

Re: [R] Reading FCS files with flowCore package

2014-11-24 Thread William Dunlap
> or to change the default to mustWork=TRUE, since there are not > many use cases for querying a non-existent system file? There are a fair number of packages depending on the current semantics. E.g. ./proxy/R/dissimilarities.R:if (system.file(package="cba") == "") ./openNLP/R/pos.R:

Re: [R] Reading FCS files with flowCore package

2014-11-24 Thread Martin Morgan
On 11/24/2014 11:38 AM, William Dunlap wrote: If help files used the mustWork=TRUE argument to system.file() this sort of problem would become more apparent to the user. It would give a clear error message from or to change the default to mustWork=TRUE, since there are not many use cases fo

Re: [R] How to print labels and how to add missing label values?

2014-11-24 Thread David Winsemius
On Nov 24, 2014, at 10:23 AM, Edoardo Prestianni wrote: > Hello everyone, > > Sorry for the "rookie" question but this is really beyond me at the moment. > > Here is my problem > > I have three datasets I am trying to work on. They're three panels. > > They have this variable, 'kecnum', which

[R] list.files() not compatible with all Unicode characters; file.exists() is compatible.

2014-11-24 Thread Nissim Kaufmann
Hello,I have some files with strange Unicode characters in their names that I am trying to remove.But list.files() does not return their names faithfully so that I can deal with them. > list.files()[1] "? text.txt"                  <--- here you should see a > question mark, a space, then text.t

Re: [R] Reading FCS files with flowCore package

2014-11-24 Thread William Dunlap
If help files used the mustWork=TRUE argument to system.file() this sort of problem would become more apparent to the user. It would give a clear error message from system.file() instead of a mysterious error about file "" not being valid or, worse, a hang from an input command waiting for the use

Re: [R] Reading FCS files with flowCore package

2014-11-24 Thread Jeff Newmiller
Wrong list. See http://www.bioconductor.org/help/support/ --- Jeff NewmillerThe . . Go Live... DCN:Basics: ##.#. ##.#. Live Go... L

Re: [R] DOT PLOT help!!

2014-11-24 Thread Jeff Newmiller
"Some" of the web sites are likely always going to be over your head. The correct strategy is to find some that are within reach, and work your way through them. If you cannot copy some example code into R and execute it from one of the sites that comes up when you search for "R dotplot" (e.g. [

Re: [R] How to print labels and how to add missing label values?

2014-11-24 Thread Edoardo Prestianni
P.S. huge typo in the e-mail object: I guess I want to print and edit "value labels", not "label values" 2014-11-24 19:23 GMT+01:00 Edoardo Prestianni : > Hello everyone, > > Sorry for the "rookie" question but this is really beyond me at the moment. > > Here is my problem > > I have three dat

[R] How to print labels and how to add missing label values?

2014-11-24 Thread Edoardo Prestianni
Hello everyone, Sorry for the "rookie" question but this is really beyond me at the moment. Here is my problem I have three datasets I am trying to work on. They're three panels. They have this variable, 'kecnum', which is present in all the three datasets, and it looks like it has been labeled

Re: [R] Reading FCS files with flowCore package

2014-11-24 Thread Martin Morgan
On 11/24/2014 06:18 AM, Luigi wrote: Dear all, I would like to use the R's Bioconductor package flowCore to do flow cytometry Please address questions about Bioconductor packages to the Bioconductor support site https://support.bioconductor.org and... analysis. I generated a FCS file us

Re: [R] DOT PLOT help!!

2014-11-24 Thread MacQueen, Don
This example (five groups instead of your two) may be close to what you are looking for: plot( rep(1:5, 20), rnorm(100)) Hopefully the ³trick² is self-evident. (R-help doesn¹t pass on most attachments, so I can¹t look at your example) To improve the labels I would do something like this:

Re: [R] Gender balance in R

2014-11-24 Thread Sarah Goslee
I took a look at apparent gender among list participants a few years ago: https://stat.ethz.ch/pipermail/r-help/2011-June/280272.html Same general thing: very few regular participants on the list were women. I don't see any sign that that has changed in the last three years. The bar to participati

Re: [R] Help me

2014-11-24 Thread Bert Gunter
No. See the posting guide link below for how to ask an intelligible question. Better yet, do your homework (is that what this is?) yourself: http://cran.r-project.org/doc/manuals/R-intro.pdf -- Bert Bert Gunter Genentech Nonclinical Biostatistics (650) 467-7374 "Data is not information. Informa

Re: [R] DOT PLOT help!!

2014-11-24 Thread Bert Gunter
Juan (and probably many others): If you are unwilling or unable to learn R by doing some minimal work on your own, then I think you ought to look for other statistical/data analysis software; or, alternatively, use R from one of several GUI interfaces that are available: R Commander, http://www.rc

[R] Gender balance in R

2014-11-24 Thread Maarten Blaauw
Hi there, I can't help to notice that the gender balance among R developers and ordinary members is extremely skewed (as it is with open source software in general). Have a look at http://www.r-project.org/foundation/memberlist.html - at most a handful of women are listed among the 'supporti

Re: [R] R 3.1.2 GUI 1.65 Mavericks build (6833) freezes in Yosemite

2014-11-24 Thread Shahrooz, Bahram (shahrobm)
David: Thanks for your response and forwarding my question to R-Mac-SIG. What do you use instead of the GUI menu option that I’v been using? Thanks, Bahram Bahram M. Shahrooz, Ph.D., P.E., FACI, FASCE, FSEI Professor of Structural Engineering Univers

[R] Help me

2014-11-24 Thread salwa_elaty11
Please any one can help me to find the estimate of 5 parameters for multiple regression model under condition multicolinearity between x's from simulation data suppose n=10 for example Thanks allot Sent from Samsung Mobile [[alternative HTML version deleted]] __

[R] ASA Stat. Computing & Stat. Graphics Student Paper Competition 2015

2014-11-24 Thread Munjal, Aarti
Statistical Computing and Statistical Graphics Sections American Statistical Association Student Paper Competition 2015 The Statistical Computing and Statistical Graphics Sections of the ASA are co-sponsoring a student paper competition on the topics of Statistical Computing and Statistical Graph

[R] DOT PLOT help!!

2014-11-24 Thread Juan Scheun
Morning everyone I am relatively new to R and although there are tons of "how to" websites, some are just way over my head. I am currently trying to figure out how to create dot plot graphs with my data, where I have categories (i.e male /female) and values for each. I would like to display this

[R] PANEL model (MCMC): Equivalent of system GMM in MCMC

2014-11-24 Thread Linus Holtermann
Dear list members, I want to fit a PANEL model via MCMC. I am concerned, that I got some covariates that are endogenous. I use MCMC for various reasons, particularly cause I got some spatial dependencies in my model. I am afraid that there are no valid instruments, so i like to apply a procedur

[R] Reading FCS files with flowCore package

2014-11-24 Thread Luigi
Dear all, I would like to use the R's Bioconductor package flowCore to do flow cytometry analysis. I generated a FCS file using the file>export function of the FACSDiva Software Version 8 from a BD LSRII machine. I then used the functions: file.name <-system.file("extdata", "cd cells_FMO 8_0

Re: [R] arcsine transformation with metafor

2014-11-24 Thread Viechtbauer Wolfgang (STAT)
> -Original Message- > From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] > On Behalf Of Antonello Preti > Sent: Monday, November 24, 2014 00:35 > To: r-help@r-project.org > Subject: [R] arcsine transformation with metafor > > # I'm trying to adapt to my own data the

[R] More RGoogleDocs - R1C1 reference style

2014-11-24 Thread Jennifer Sabatier
Thank you all for helping grab data off Google Docs. Now I have another problem. When I pull the data all the formulas come into R as R1C1 reference style, while in Google Docs they're A1 reference style. As a result, the formulas are strings in the cells, rather than values: =AND((R[0]C[34]=1