On Aug 26, 2014, at 3:25 PM, Benjamin Tyner wrote:
> Hi,
>
> According to
> https://svn.r-project.org/R-packages/trunk/lattice/R/print.trellis.R,
>
>"[panel.number] is usually the same as, but can be different from
> packet.number"
>
> and I had been under the impression that as long as th
Hi Madhvi,
First, please use "reply-all" when responding to emails form this list
so that others can help (and benefit from) the discussion.
Comment down below:
On 26 Aug 2014, at 22:15, madhvi.gupta wrote:
On 08/27/2014 10:42 AM, Steve Lianoglou wrote:
Hi,
On Tue, Aug 26, 2014 at 9:56 PM
On Aug 26, 2014, at 9:56 PM, madhvi.gupta wrote:
> Hi,
>
> I am applyin function as.numeric to a vector having many values as NA and it
> is giving :
> Warning message:
> NAs introduced by coercion
>
> Can anyone help me to know how to remove this warning and sor it out?
You are the one that
hello
i want to fill a matrix by its upper off diagonal elements
specifically I want to take the first and second column of� the matrix and I
apply a function to then that returns a single number which I want to place in
the (1,2) entry of the matrix, then I want to take the first and third col
Hi,
On Tue, Aug 26, 2014 at 9:56 PM, madhvi.gupta wrote:
> Hi,
>
> I am applyin function as.numeric to a vector having many values as NA and it
> is giving :
> Warning message:
> NAs introduced by coercion
>
> Can anyone help me to know how to remove this warning and sor it out?
Let's say that t
Hi,
I am applyin function as.numeric to a vector having many values as NA
and it is giving :
Warning message:
NAs introduced by coercion
Can anyone help me to know how to remove this warning and sor it out?
Thanks
Madhvi
__
R-help@r-project.org mai
So, the decisive factor is whether the input string be on the search() name
list, and not related with the envir's name attribute.
When we using attach, it is becasue the name attribute just match the search()
name list(or say,search() name list just use the name attribute), so
as.environment()
Dear expeRts,
I would like to find out how R computes pbinom(). A grep in the
source code reveiled src/library/stats/R/distn.R:146:
.External(C_pbinom, q, size, prob, lower.tail, log.p), so
'C_pbinom' refers to compiled C/C++ code loaded into R. Where can
I find the source code of C_pbinom?
Cheer
On Aug 26, 2014, at 5:24 PM, Henrik Bengtsson wrote:
> Hi,
>
> does anyone know of an implementation/function that sorts strings that
> *contain* roman numerals (I, II, III, IV, V, ...) which are treated as
> numbers. In 'gtools' there is mixedsort() which does this for strings
> that contains
Using the ncdf4 library requires some knowledge of netcdf files and how they
work. However, if you can provide the following information I may be able to
provide some pointers. I am assuming your file is named "myFile.nc". Where
you see that replace with the actual name.
library(ncdf4)
myFi
Hi,
does anyone know of an implementation/function that sorts strings that
*contain* roman numerals (I, II, III, IV, V, ...) which are treated as
numbers. In 'gtools' there is mixedsort() which does this for strings
that contains (decimal) numbers. I'm looking for a "mixedsortroman()"
function t
Hi,
I have this huge ( ~30GB) .nc file (NC_FORMAT_NETCDF4_CLASSIC)) for the
whole country 141.00 to 52.00 W, 41.00 to 84.00 N".
I am trying to clip this big dataset for a small region specific domain
(120.00 to 130.00 W, 50.00 to 60.00 N).
I am trying to do using netCDF4 r package but could not fig
Hi,
According to
https://svn.r-project.org/R-packages/trunk/lattice/R/print.trellis.R,
"[panel.number] is usually the same as, but can be different from
packet.number"
and I had been under the impression that as long as the user is not
using a custom index.cond nor perm.cond, the panel.numbe
On Aug 26, 2014, at 2:33 PM, Silong Liao wrote:
> Dear R users,
>
> I'm trying to plot survival probability against time(in years) using
> "survreg" and "intcox". Please can you help me with this problem? (I have
> rewritten using plain text.) I tried to use "curve" function but have no clue.
Dear R users,
I'm trying to plot survival probability against time(in years) using "survreg"
and "intcox". Please can you help me with this problem? (I have rewritten using
plain text.) I tried to use "curve" function but have no clue.
For survreg,
>mod.reg1=survreg(s_new~type+sex+eye+preopiop+
I would suggest building your first package with as few functions as you can
(one?). Once you get that working, try adding more functions and keep
rebuilding as you go so the error messages don't drown you. In any event, your
immediate problem is that CanceR-package.Rd has not been properly edit
Dan Dillon gmail.com> writes:
>
> Colleagues:
>
[snip]
>
> My data are from a behavioral experiment in which two groups of subjects
> complete 200+ trials of a task with two conditions. Each subject is tested
> in one of four separate locations. I record accuracy (0 or 1) and response
> tim
Dear All,
I am trying to built for the first time a package. I am following this
tutorial:
https://support.rstudio.com/hc/en-us/articles/200486488-Developing-Packages-with-RStudio
I create a new Project (package) and I added 44 .R sources files
(functions).
After, I got error message when I built
On Aug 26, 2014, at 4:17 AM, Silong Liao wrote:
> Dear R users,
> I'm trying to plot survival probability against time(in years) using
> "survreg" and "intcox". Please can you help me with this problem?
That line at the bottom of the message delivered to the list subscribers saying
that the HT
as.environment(characterString) maps an entry from the output of
search() to the environment at the named position in the search list.
as.environment(number) maps an index into the output of search() to
the the environment at that position in the search list. If
'characterString' is not in the out
Did you attach the raster package with library(raster)? It seems the
newest version of dismo does not depend on raster, so you will not be
able to use raster-functions if you only attach dismo.
This error message typically comes when R tries to use
utils:::stack.default instead of the stack-func
Dear R users,
I'm trying to plot survival probability against time(in years) using "survreg"
and "intcox". Please can you help me with this problem?
My code shows
below:>mod.reg1=survreg(s_new~type+sex+eye+preopiop+preopva,dist="weibull")>summary(mod.reg1)
Call:survreg(formula = s_new ~ type + se
On Tuesday, August 19, 2014 9:46 PM Thomas Lumley wrote:
>> Is anyone aware of an(other) implementation in R?
> survey::svyranktest
Oh, that easy. Thanks a lot.
Actually, in my case the weights do not derive from some selection
probabilities, but your test works anyway.
For completeness (and
Hi,
This is the process I want to do:
> files <- list.files(path=paste(system.file(package="dismo"), '/ex',
sep=''), pattern='grd', full.names=TRUE )
> # The above finds all the files with extension "grd" in the
> # examples ("ex") directory of the dismo package. You do not
> # need such a compl
Dear experts,
I have 5 environmental predictors and abundance data (300 samples, 60
species, transformation: log(x + min(x,x > 0) and use the function
'gradientForest' to estimate (R�-weighted) predictor importance
(regression trees). The resulting predictor importance in decreasing
order is a
Assuming your sample data is called dta:
> table(dta$Results, dta$Analysis)
A B C
1-5 1 1 0
20-50 1 0 0
4-7 0 0 1
8-9 0 1 1
David L. Carlson
Department of Anthropology
Texas A&M University
-Original Message-
From: r-help-boun...@r-project.org [mailto:r-hel
Hi
That is because do.call is one function and rbind another. For both functions
you can find its help page and read:
rbind
vectors or matrices. These can be given as named arguments. Other R objects
will be coerced as appropriate: see sections ‘Details’ and ‘Value’.
The type of a matrix result
Thank you so much!
Why do do.call(rbind,lapply(lll,rbind)) and rbind(lapply(lll,rbind)) act so
differently? What is the tricky part of that?
> do.call(rbind,lapply(lll,rbind))
statistic parameter p.value conf.int estimate null.value alternative
[1,] 2.775282 37.99977 0.008509272 Numeric,2 Numeric,
Hi
Please reply also to rhelp, maybe others can offer better answer.
Well, are you aware that by unlist you get all results as character values and
not numbers?
Personally I would use lapply and do.call on final result to get it as data
frame.
Here is example
Some model list data
lll<-vector("lis
Hi all,
What would a typical miRNA microarray analysis workflow look like? Say just a
test group of 5 replicates from bladder cancer tumor and corresponding control
group from normal tissue of the same patients. What could I do to make the
analysis seems more sophisticated. I have done different
Hi,,
Thanks for the link, I have tried that but it seems my data is in the wrong
format for that to work.
On 26 August 2014 10:35, João Azevedo Patrício wrote:
> Em 26-08-2014 09:30, Jurgens de Bruin escreveu:
>
> Hi,
>>
>> I am new to R and dont use it very often so I would appreciate some he
Em 26-08-2014 09:30, Jurgens de Bruin escreveu:
Hi,
I am new to R and dont use it very often so I would appreciate some help.
I would like to create a VennDiagram based on the following, I have
analyzed experimental results using different methods and captured the
results of each analysis.
I wo
Hi,
I am new to R and dont use it very often so I would appreciate some help.
I would like to create a VennDiagram based on the following, I have
analyzed experimental results using different methods and captured the
results of each analysis.
I would like the VennDiagram to show the overlap in re
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